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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
109774-109947
(-)
lysine
108049-109663 (-)
LAC30SC_00520
Glutamine ABC transporter
LAC30SC_00520
Operon
DOOR ID:
820711
LAC30SC_00515,
LAC30SC_00520
View Structure
2
213858-214021
(+)
ykoK
214097-216761 (+)
LAC30SC_01025
Cation transporter P-ATPase
LAC30SC_01025
Single gene
DOOR ID:
3078144
LAC30SC_01025
View Structure
3
243730-243827
(-)
purine
243077-243656 (-)
LAC30SC_01150
Xanthine phosphoribosyltransferase (XPRTase) (2)
LAC30SC_01150
Operon
DOOR ID:
820739
LAC30SC_01145,
LAC30SC_01150
View Structure
4
529294-529457
(+)
ykoK
529537-532225 (+)
LAC30SC_02595
Magnesium-translocating P-type ATPase
LAC30SC_02595
Single gene
DOOR ID:
3078246
LAC30SC_02595
View Structure
5
548317-548377
(-)
fluoride
546952-548239 (-)
eno
Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
LAC30SC_02650
Single gene
DOOR ID:
3078252
LAC30SC_02650
(eno)
View Structure
6
608353-608445
(+)
TPP
608495-609074 (+)
LAC30SC_02935
LAC30SC_02935
Single gene
DOOR ID:
3078281
LAC30SC_02935
View Structure
7
879065-879235
(+)
lysine
879326-880637 (+)
LAC30SC_04275
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LAC30SC_04275
Operon
DOOR ID:
820853
LAC30SC_04275,
LAC30SC_04280,
LAC30SC_04285,
LAC30SC_04290,
LAC30SC_04295,
LAC30SC_04300,
LAC30SC_04305
View Structure
8
983645-983759
(+)
FMN
983836-984526 (+)
LAC30SC_04845
Riboflavin transporter
LAC30SC_04845
Single gene
DOOR ID:
3078400
LAC30SC_04845
View Structure
9
1012604-1012662
(+)
fluoride
1012705-1013095 (+)
LAC30SC_04980
Putative fluoride ion transporter CrcB
LAC30SC_04980
Operon
DOOR ID:
820881
LAC30SC_04980,
LAC30SC_04985
View Structure
10
1707837-1707930
(-)
SMK_box
1705156-1706617 (-)
LAC30SC_08805
Permease of the major facilitator superfamily protein
LAC30SC_08805
Operon
DOOR ID:
821015
LAC30SC_08805,
LAC30SC_08810
View Structure
11
2040801-2040898
(+)
purine
2040970-2042281 (+)
LAC30SC_10525
Xanthine/uracil/vitamin C permease
LAC30SC_10525
Single gene
DOOR ID:
3078793
LAC30SC_10525
View Structure
Genome:
Lactobacillus acidophilus 30SC
(
NC_015214.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"529294-529457";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"529537-532225";i:10;s:1:"+";i:11;s:13:"LAC30SC_02595";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:13:"LAC30SC_02595";i:14;s:11:"Single gene";i:15;s:7:"3078246";i:16;s:13:"LAC30SC_02595";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"548317-548377";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"546952-548239";i:10;s:1:"-";i:11;s:3:"eno";i:12;s:80:"Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)";i:13;s:13:"LAC30SC_02650";i:14;s:11:"Single gene";i:15;s:7:"3078252";i:16;s:18:"LAC30SC_02650(eno)";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"608353-608445";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"608495-609074";i:10;s:1:"+";i:11;s:13:"LAC30SC_02935";i:12;s:0:"";i:13;s:13:"LAC30SC_02935";i:14;s:11:"Single gene";i:15;s:7:"3078281";i:16;s:13:"LAC30SC_02935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"879065-879235";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"879326-880637";i:10;s:1:"+";i:11;s:13:"LAC30SC_04275";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:13:"LAC30SC_04275";i:14;s:6:"Operon";i:15;s:6:"820853";i:16;s:97:"LAC30SC_04275;LAC30SC_04280;LAC30SC_04285;LAC30SC_04290;LAC30SC_04295;LAC30SC_04300;LAC30SC_04305";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"983645-983759";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"983836-984526";i:10;s:1:"+";i:11;s:13:"LAC30SC_04845";i:12;s:22:"Riboflavin transporter";i:13;s:13:"LAC30SC_04845";i:14;s:11:"Single gene";i:15;s:7:"3078400";i:16;s:13:"LAC30SC_04845";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1012604-1012662";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1012705-1013095";i:10;s:1:"+";i:11;s:13:"LAC30SC_04980";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:13:"LAC30SC_04980";i:14;s:6:"Operon";i:15;s:6:"820881";i:16;s:27:"LAC30SC_04980;LAC30SC_04985";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1707837-1707930";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1705156-1706617";i:10;s:1:"-";i:11;s:13:"LAC30SC_08805";i:12;s:53:"Permease of the major facilitator superfamily protein";i:13;s:13:"LAC30SC_08805";i:14;s:6:"Operon";i:15;s:6:"821015";i:16;s:27:"LAC30SC_08805;LAC30SC_08810";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015214.1";i:2;s:31:"Lactobacillus acidophilus 30SC ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2040801-2040898";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2040970-2042281";i:10;s:1:"+";i:11;s:13:"LAC30SC_10525";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:13:"LAC30SC_10525";i:14;s:11:"Single gene";i:15;s:7:"3078793";i:16;s:13:"LAC30SC_10525";i:17;s:0:"";i:18;s:15:"View Structure ";}}
