RiboswitchDB

Genome: Desulfurobacterium thermolithotrophum DSM 11699 (NC_015185.1); Phylum: Aquificae

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

94806-94994 (+)

cobalamin

95024-95801 (+)

Dester_0106

Periplasmic binding protein

Operon

DOOR ID: 819659

Dester_0106,
Dester_0107,
Dester_0108,
Dester_0109,
Dester_0110

2

240077-240275 (-)

cobalamin

237786-239952 (-)

Dester_0253

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)

Operon

DOOR ID: 819688

Dester_0248,
Dester_0249,
Dester_0250,
Dester_0251,
Dester_0252,
Dester_0253

3

1473757-1473863 (+)

TPP

1473916-1474711 (+)

Dester_1473

Thiamine thiazole synthase

Operon

DOOR ID: 819906

Dester_1473,
Dester_1474,
Dester_1475,
Dester_1476,
Dester_1477,
Dester_1478,
Dester_1479

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015185.1";i:2;s:48:"Desulfurobacterium thermolithotrophum DSM 11699 ";i:3;s:9:"Aquificae";i:4;s:6:"187857";i:5;s:13:"240077-240275";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"237786-239952";i:10;s:1:"-";i:11;s:11:"Dester_0253";i:12;s:73:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)";i:13;s:11:"Dester_0253";i:14;s:6:"Operon";i:15;s:6:"819688";i:16;s:71:"Dester_0248;Dester_0249;Dester_0250;Dester_0251;Dester_0252;Dester_0253";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015185.1";i:2;s:48:"Desulfurobacterium thermolithotrophum DSM 11699 ";i:3;s:9:"Aquificae";i:4;s:6:"187857";i:5;s:15:"1473757-1473863";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1473916-1474711";i:10;s:1:"+";i:11;s:11:"Dester_1473";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:11:"Dester_1473";i:14;s:6:"Operon";i:15;s:6:"819906";i:16;s:83:"Dester_1473;Dester_1474;Dester_1475;Dester_1476;Dester_1477;Dester_1478;Dester_1479";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure
";}}