About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
749393-749489
(-)
TPP
749137-749338 (-)
Odosp_0634
Thiamine biosynthesis protein ThiS
Odosp_0634
Single gene
DOOR ID:
3066422
Odosp_0634
View Structure
2
2433755-2433942
(+)
cobalamin
2434079-2435120 (+)
Odosp_2042
Odosp_2042
Operon
DOOR ID:
814077
Odosp_2042,
Odosp_2043,
Odosp_2044,
Odosp_2045
View Structure
3
2447151-2447352
(-)
cobalamin
2445845-2446862 (-)
Odosp_2051
Odosp_2051
Operon
DOOR ID:
814079
Odosp_2050,
Odosp_2051
View Structure
4
2451938-2452140
(-)
cobalamin
2450707-2451811 (-)
Odosp_2055
Methionine synthase vitamin-B12 independent
Odosp_2055
Operon
DOOR ID:
814080
Odosp_2053,
Odosp_2054,
Odosp_2055
View Structure
5
2452365-2452569
(-)
cobalamin
2450707-2451811 (-)
Odosp_2055
Methionine synthase vitamin-B12 independent
Odosp_2055
Operon
DOOR ID:
814080
Odosp_2053,
Odosp_2054,
Odosp_2055
View Structure
6
2460284-2460488
(-)
cobalamin
2458543-2460007 (-)
Odosp_2062
Vinylacetyl-CoA Delta-isomerase
Odosp_2062
Operon
DOOR ID:
814081
Odosp_2059,
Odosp_2060,
Odosp_2061,
Odosp_2062
View Structure
7
2460848-2461034
(+)
cobalamin
2461250-2462792 (+)
Odosp_2063
Propionyl-CoA carboxylase
Odosp_2063
Operon
DOOR ID:
814082
Odosp_2063,
Odosp_2064,
Odosp_2065,
Odosp_2066,
Odosp_2067
View Structure
8
2884372-2884562
(+)
cobalamin
2884585-2885728 (+)
Odosp_2413
Periplasmic binding protein
Odosp_2413
Operon
DOOR ID:
814157
Odosp_2413,
Odosp_2414,
Odosp_2415
View Structure
9
2903105-2903299
(-)
cobalamin
2901607-2903098 (-)
Odosp_2427
Odosp_2427
Operon
DOOR ID:
814160
Odosp_2426,
Odosp_2427
View Structure
10
2904689-2904884
(-)
cobalamin
2903579-2904500 (-)
Odosp_2428
Sirohydrochlorin cobaltochelatase
Odosp_2428
Single gene
DOOR ID:
3066930
Odosp_2428
View Structure
11
2922965-2923167
(-)
cobalamin
2920612-2922859 (-)
Odosp_2441
TonB-dependent receptor
Odosp_2441
Single gene
DOOR ID:
3066933
Odosp_2441
View Structure
12
2927143-2927336
(-)
cobalamin
2924883-2927088 (-)
Odosp_2445
TonB-dependent receptor
Odosp_2445
Operon
DOOR ID:
814164
Odosp_2442,
Odosp_2443,
Odosp_2444,
Odosp_2445
View Structure
13
2966306-2966510
(-)
cobalamin
2963863-2965987 (-)
Odosp_2474
TonB-dependent receptor plug
Odosp_2474
Operon
DOOR ID:
814171
Odosp_2473,
Odosp_2474
View Structure
14
3053764-3053961
(-)
cobalamin
3051458-3053666 (-)
Odosp_2541
Anaerobic ribonucleoside-triphosphate reductase
Odosp_2541
Operon
DOOR ID:
814187
Odosp_2540,
Odosp_2541
View Structure
15
3060750-3060953
(+)
cobalamin
3061026-3061203 (+)
Odosp_2549
Odosp_2549
Single gene
DOOR ID:
3066961
Odosp_2549
View Structure
16
3302983-3303175
(+)
cobalamin
3303333-3304299 (+)
Odosp_2774
Odosp_2774
Single gene
DOOR ID:
3067014
Odosp_2774
View Structure
17
4073622-4073726
(-)
SAM
4073502-4073607 (-)
Odosp_3420
Odosp_3420
Single gene
DOOR ID:
3067192
Odosp_3420
View Structure
18
4137394-4137513
(+)
FMN
4137520-4138714 (+)
Odosp_3470
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Odosp_3470
Operon
DOOR ID:
814389
Odosp_3470,
Odosp_3471,
Odosp_3472,
Odosp_3473
View Structure
19
4335380-4335572
(-)
cobalamin
4334307-4335225 (-)
Odosp_3637
Odosp_3637
Single gene
DOOR ID:
3067253
Odosp_3637
View Structure
Genome:
Odoribacter splanchnicus DSM 20712
(
NC_015160.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"749393-749489";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"749137-749338";i:10;s:1:"-";i:11;s:10:"Odosp_0634";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Odosp_0634";i:14;s:11:"Single gene";i:15;s:7:"3066422";i:16;s:10:"Odosp_0634";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2433755-2433942";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2434079-2435120";i:10;s:1:"+";i:11;s:10:"Odosp_2042";i:12;s:0:"";i:13;s:10:"Odosp_2042";i:14;s:6:"Operon";i:15;s:6:"814077";i:16;s:43:"Odosp_2042;Odosp_2043;Odosp_2044;Odosp_2045";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2447151-2447352";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2445845-2446862";i:10;s:1:"-";i:11;s:10:"Odosp_2051";i:12;s:0:"";i:13;s:10:"Odosp_2051";i:14;s:6:"Operon";i:15;s:6:"814079";i:16;s:21:"Odosp_2050;Odosp_2051";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2451938-2452140";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:6:"Tandem";i:9;s:15:"2450707-2451811";i:10;s:1:"-";i:11;s:10:"Odosp_2055";i:12;s:43:"Methionine synthase vitamin-B12 independent";i:13;s:10:"Odosp_2055";i:14;s:6:"Operon";i:15;s:6:"814080";i:16;s:32:"Odosp_2053;Odosp_2054;Odosp_2055";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2452365-2452569";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:6:"Tandem";i:9;s:15:"2450707-2451811";i:10;s:1:"-";i:11;s:10:"Odosp_2055";i:12;s:43:"Methionine synthase vitamin-B12 independent";i:13;s:10:"Odosp_2055";i:14;s:6:"Operon";i:15;s:6:"814080";i:16;s:32:"Odosp_2053;Odosp_2054;Odosp_2055";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2460284-2460488";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2458543-2460007";i:10;s:1:"-";i:11;s:10:"Odosp_2062";i:12;s:32:"Vinylacetyl-CoA Delta-isomerase ";i:13;s:10:"Odosp_2062";i:14;s:6:"Operon";i:15;s:6:"814081";i:16;s:43:"Odosp_2059;Odosp_2060;Odosp_2061;Odosp_2062";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2460848-2461034";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2461250-2462792";i:10;s:1:"+";i:11;s:10:"Odosp_2063";i:12;s:26:"Propionyl-CoA carboxylase ";i:13;s:10:"Odosp_2063";i:14;s:6:"Operon";i:15;s:6:"814082";i:16;s:54:"Odosp_2063;Odosp_2064;Odosp_2065;Odosp_2066;Odosp_2067";i:17;s:44:"fatty acid biosynthetic process [GO:0006633]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2884372-2884562";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2884585-2885728";i:10;s:1:"+";i:11;s:10:"Odosp_2413";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Odosp_2413";i:14;s:6:"Operon";i:15;s:6:"814157";i:16;s:32:"Odosp_2413;Odosp_2414;Odosp_2415";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2903105-2903299";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2901607-2903098";i:10;s:1:"-";i:11;s:10:"Odosp_2427";i:12;s:0:"";i:13;s:10:"Odosp_2427";i:14;s:6:"Operon";i:15;s:6:"814160";i:16;s:21:"Odosp_2426;Odosp_2427";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2904689-2904884";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2903579-2904500";i:10;s:1:"-";i:11;s:10:"Odosp_2428";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:10:"Odosp_2428";i:14;s:11:"Single gene";i:15;s:7:"3066930";i:16;s:10:"Odosp_2428";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2922965-2923167";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2920612-2922859";i:10;s:1:"-";i:11;s:10:"Odosp_2441";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Odosp_2441";i:14;s:11:"Single gene";i:15;s:7:"3066933";i:16;s:10:"Odosp_2441";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2927143-2927336";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2924883-2927088";i:10;s:1:"-";i:11;s:10:"Odosp_2445";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Odosp_2445";i:14;s:6:"Operon";i:15;s:6:"814164";i:16;s:43:"Odosp_2442;Odosp_2443;Odosp_2444;Odosp_2445";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2966306-2966510";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2963863-2965987";i:10;s:1:"-";i:11;s:10:"Odosp_2474";i:12;s:28:"TonB-dependent receptor plug";i:13;s:10:"Odosp_2474";i:14;s:6:"Operon";i:15;s:6:"814171";i:16;s:21:"Odosp_2473;Odosp_2474";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3053764-3053961";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3051458-3053666";i:10;s:1:"-";i:11;s:10:"Odosp_2541";i:12;s:48:"Anaerobic ribonucleoside-triphosphate reductase ";i:13;s:10:"Odosp_2541";i:14;s:6:"Operon";i:15;s:6:"814187";i:16;s:21:"Odosp_2540;Odosp_2541";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3060750-3060953";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3061026-3061203";i:10;s:1:"+";i:11;s:10:"Odosp_2549";i:12;s:0:"";i:13;s:10:"Odosp_2549";i:14;s:11:"Single gene";i:15;s:7:"3066961";i:16;s:10:"Odosp_2549";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3302983-3303175";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3303333-3304299";i:10;s:1:"+";i:11;s:10:"Odosp_2774";i:12;s:0:"";i:13;s:10:"Odosp_2774";i:14;s:11:"Single gene";i:15;s:7:"3067014";i:16;s:10:"Odosp_2774";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4073622-4073726";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4073502-4073607";i:10;s:1:"-";i:11;s:10:"Odosp_3420";i:12;s:0:"";i:13;s:10:"Odosp_3420";i:14;s:11:"Single gene";i:15;s:7:"3067192";i:16;s:10:"Odosp_3420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4137394-4137513";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4137520-4138714";i:10;s:1:"+";i:11;s:10:"Odosp_3470";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Odosp_3470";i:14;s:6:"Operon";i:15;s:6:"814389";i:16;s:43:"Odosp_3470;Odosp_3471;Odosp_3472;Odosp_3473";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_015160.1";i:2;s:35:"Odoribacter splanchnicus DSM 20712 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4335380-4335572";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4334307-4335225";i:10;s:1:"-";i:11;s:10:"Odosp_3637";i:12;s:0:"";i:13;s:10:"Odosp_3637";i:14;s:11:"Single gene";i:15;s:7:"3067253";i:16;s:10:"Odosp_3637";i:17;s:0:"";i:18;s:15:"View Structure ";}}