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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
7592-7772
(+)
cobalamin
7841-9917 (+)
SpiBuddy_0009
Anaerobic ribonucleoside-triphosphate reductase
SpiBuddy_0009
Operon
DOOR ID:
812704
SpiBuddy_0009,
SpiBuddy_0010
View Structure
2
636752-636938
(-)
cobalamin
634770-636639 (-)
SpiBuddy_0595
TonB-dependent receptor
SpiBuddy_0595
Single gene
DOOR ID:
3065365
SpiBuddy_0595
View Structure
3
1343920-1343997
(+)
fluoride
1344019-1345285 (+)
SpiBuddy_1248
Sodium/hydrogen exchanger
SpiBuddy_1248
Single gene
DOOR ID:
3065548
SpiBuddy_1248
View Structure
4
1602181-1602359
(+)
cobalamin
1602411-1603287 (+)
SpiBuddy_1476
ABC-type transporter; periplasmic subunit
SpiBuddy_1476
Operon
DOOR ID:
813021
SpiBuddy_1476,
SpiBuddy_1477,
SpiBuddy_1478,
SpiBuddy_1479,
SpiBuddy_1480,
SpiBuddy_1481,
SpiBuddy_1482
View Structure
5
1640713-1640791
(+)
sam-alpha
1641176-1642139 (-)
SpiBuddy_1514
Diguanylate cyclase
SpiBuddy_1514
Single gene
DOOR ID:
3065586
SpiBuddy_1514
View Structure
6
2079292-2079383
(+)
TPP
2079426-2080452 (+)
SpiBuddy_1909
ABC transporter; periplasmic binding protein; thiB subfamily
SpiBuddy_1909
Operon
DOOR ID:
813110
SpiBuddy_1909,
SpiBuddy_1910,
SpiBuddy_1911,
SpiBuddy_1912,
SpiBuddy_1913,
SpiBuddy_1914
View Structure
7
2695118-2695201
(-)
fluoride
2693475-2694681 (-)
SpiBuddy_2479
Cell wall/surface repeat protein
SpiBuddy_2479
Single gene
DOOR ID:
3065851
SpiBuddy_2479
View Structure
Genome:
Spirochaeta sp. Buddy
(
NC_015152.1
);
Phylum:
Spirochaetia
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