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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
105405-105679
(+)
cobalamin
105769-106651 (+)
Acav_0088
Precorrin-4 C11-methyltransferase (33)
Acav_0088
Operon
DOOR ID:
809855
Acav_0088,
Acav_0089,
Acav_0090,
Acav_0091,
Acav_0092,
Acav_0093,
Acav_0094,
Acav_0095,
Acav_0096,
Acav_0097,
Acav_0098
View Structure
2
292793-292907
(+)
SAH
292936-295660 (+)
Acav_0266
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Acav_0266
Single gene
DOOR ID:
3060556
Acav_0266
View Structure
3
834938-835064
(+)
TPP
835227-837069 (+)
Acav_0760
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Acav_0760
Single gene
DOOR ID:
3060724
Acav_0760
View Structure
4
1757861-1758125
(+)
cobalamin
1760077-1761523 (+)
Acav_1578
CobB/CobQ domain protein glutamine amidotransferase
Acav_1578
Operon
DOOR ID:
810169
Acav_1577,
Acav_1578,
Acav_1579,
Acav_1580,
Acav_1581,
Acav_1582
View Structure
5
2364339-2364468
(-)
glycine
2363144-2364281 (-)
Acav_2117
Glycine cleavage system T protein (0)
Acav_2117
Operon
DOOR ID:
810281
Acav_2116,
Acav_2117
View Structure
6
2364488-2364586
(-)
glycine
2363144-2364281 (-)
Acav_2117
Glycine cleavage system T protein (0)
Acav_2117
Operon
DOOR ID:
810281
Acav_2116,
Acav_2117
View Structure
7
2473690-2473789
(-)
TPP
2472499-2473618 (-)
Acav_2214
FAD dependent oxidoreductase
Acav_2214
Operon
DOOR ID:
810304
Acav_2213,
Acav_2214
View Structure
8
2528890-2529073
(+)
FMN
2529220-2529922 (+)
Acav_2268
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Acav_2268
Single gene
DOOR ID:
3061212
Acav_2268
View Structure
9
2574751-2574909
(-)
ZMP-ZTP
2573467-2574712 (-)
Acav_2305
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Acav_2305
Operon
DOOR ID:
810325
Acav_2304,
Acav_2305
View Structure
10
4548432-4548526
(-)
SAH
4546934-4548362 (-)
Acav_3976
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Acav_3976
Single gene
DOOR ID:
3061844
Acav_3976
View Structure
11
5036669-5036778
(+)
glycine
5036864-5038184 (+)
Acav_4410
D-amino-acid dehydrogenase
Acav_4410
Single gene
DOOR ID:
3061989
Acav_4410
View Structure
12
5049604-5049695
(-)
TPP
5048416-5049511 (-)
Acav_4421
Acyl-protein synthetase LuxE
Acav_4421
Operon
DOOR ID:
810756
Acav_4418,
Acav_4419,
Acav_4420,
Acav_4421
View Structure
13
5463762-5463944
(-)
yybP-ykoY
5463160-5463739 (-)
Acav_4771
Acav_4771
Single gene
DOOR ID:
3062120
Acav_4771
View Structure
Genome:
Acidovorax avenae subsp. avenae ATCC 19860
(
NC_015138.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"105405-105679";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"105769-106651";i:10;s:1:"+";i:11;s:9:"Acav_0088";i:12;s:38:"Precorrin-4 C11-methyltransferase (33)";i:13;s:9:"Acav_0088";i:14;s:6:"Operon";i:15;s:6:"809855";i:16;s:109:"Acav_0088;Acav_0089;Acav_0090;Acav_0091;Acav_0092;Acav_0093;Acav_0094;Acav_0095;Acav_0096;Acav_0097;Acav_0098";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; oxidation-reduction process [GO:0055114]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"292793-292907";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"292936-295660";i:10;s:1:"+";i:11;s:9:"Acav_0266";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Acav_0266";i:14;s:11:"Single gene";i:15;s:7:"3060556";i:16;s:9:"Acav_0266";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"834938-835064";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"835227-837069";i:10;s:1:"+";i:11;s:9:"Acav_0760";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Acav_0760";i:14;s:11:"Single gene";i:15;s:7:"3060724";i:16;s:9:"Acav_0760";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1757861-1758125";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1760077-1761523";i:10;s:1:"+";i:11;s:9:"Acav_1578";i:12;s:51:"CobB/CobQ domain protein glutamine amidotransferase";i:13;s:9:"Acav_1578";i:14;s:6:"Operon";i:15;s:6:"810169";i:16;s:59:"Acav_1577;Acav_1578;Acav_1579;Acav_1580;Acav_1581;Acav_1582";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2364339-2364468";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2363144-2364281";i:10;s:1:"-";i:11;s:9:"Acav_2117";i:12;s:37:"Glycine cleavage system T protein (0)";i:13;s:9:"Acav_2117";i:14;s:6:"Operon";i:15;s:6:"810281";i:16;s:19:"Acav_2116;Acav_2117";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2364488-2364586";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2363144-2364281";i:10;s:1:"-";i:11;s:9:"Acav_2117";i:12;s:37:"Glycine cleavage system T protein (0)";i:13;s:9:"Acav_2117";i:14;s:6:"Operon";i:15;s:6:"810281";i:16;s:19:"Acav_2116;Acav_2117";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2473690-2473789";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2472499-2473618";i:10;s:1:"-";i:11;s:9:"Acav_2214";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:9:"Acav_2214";i:14;s:6:"Operon";i:15;s:6:"810304";i:16;s:19:"Acav_2213;Acav_2214";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2528890-2529073";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2529220-2529922";i:10;s:1:"+";i:11;s:9:"Acav_2268";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Acav_2268";i:14;s:11:"Single gene";i:15;s:7:"3061212";i:16;s:9:"Acav_2268";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2574751-2574909";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2573467-2574712";i:10;s:1:"-";i:11;s:9:"Acav_2305";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Acav_2305";i:14;s:6:"Operon";i:15;s:6:"810325";i:16;s:19:"Acav_2304;Acav_2305";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4548432-4548526";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4546934-4548362";i:10;s:1:"-";i:11;s:9:"Acav_3976";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Acav_3976";i:14;s:11:"Single gene";i:15;s:7:"3061844";i:16;s:9:"Acav_3976";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5036669-5036778";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"5036864-5038184";i:10;s:1:"+";i:11;s:9:"Acav_4410";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:9:"Acav_4410";i:14;s:11:"Single gene";i:15;s:7:"3061989";i:16;s:9:"Acav_4410";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5049604-5049695";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5048416-5049511";i:10;s:1:"-";i:11;s:9:"Acav_4421";i:12;s:28:"Acyl-protein synthetase LuxE";i:13;s:9:"Acav_4421";i:14;s:6:"Operon";i:15;s:6:"810756";i:16;s:39:"Acav_4418;Acav_4419;Acav_4420;Acav_4421";i:17;s:28:"bioluminescence [GO:0008218]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015138.1";i:2;s:43:"Acidovorax avenae subsp. avenae ATCC 19860 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5463762-5463944";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5463160-5463739";i:10;s:1:"-";i:11;s:9:"Acav_4771";i:12;s:0:"";i:13;s:9:"Acav_4771";i:14;s:11:"Single gene";i:15;s:7:"3062120";i:16;s:9:"Acav_4771";i:17;s:0:"";i:18;s:15:"View Structure ";}}