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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
21472-21564
(+)
glycine
21736-22948 (+)
BC1001_3623
D-amino-acid dehydrogenase
BC1001_3623
Single gene
DOOR ID:
3059395
BC1001_3623
View Structure
2
98349-98540
(+)
cobalamin
98565-100284 (+)
BC1001_3690
Precorrin-3B synthase
BC1001_3690
Operon
DOOR ID:
809410
BC1001_3690,
BC1001_3691,
BC1001_3692,
BC1001_3693
View Structure
3
1023144-1023256
(+)
ykkC-yxkD
1023314-1024382 (+)
BC1001_4518
ABC transporter periplasmic binding protein; urea carboxylase region
BC1001_4518
Operon
DOOR ID:
809557
BC1001_4518,
BC1001_4519,
BC1001_4520,
BC1001_4521,
BC1001_4522,
BC1001_4523,
BC1001_4524,
BC1001_4525
View Structure
4
1027518-1027562
(+)
mini-ykkC
1027565-1031207 (+)
BC1001_4524
BC1001_4524
Operon
DOOR ID:
809557
BC1001_4518,
BC1001_4519,
BC1001_4520,
BC1001_4521,
BC1001_4522,
BC1001_4523,
BC1001_4524,
BC1001_4525
View Structure
5
1664956-1665020
(+)
cobalamin
1665083-1665305 (+)
BC1001_5081
BC1001_5081
Operon
DOOR ID:
809661
BC1001_5081,
BC1001_5082
View Structure
6
2487330-2487569
(-)
cobalamin
2486296-2487091 (-)
BC1001_5805
Uroporphyrin-III C-methyltransferase
BC1001_5805
Operon
DOOR ID:
809792
BC1001_5801,
BC1001_5802,
BC1001_5803,
BC1001_5804,
BC1001_5805
View Structure
7
2487639-2487919
(+)
cobalamin
2488084-2489179 (+)
BC1001_5806
Cobalamin biosynthesis protein CobW
BC1001_5806
Operon
DOOR ID:
809793
BC1001_5806,
BC1001_5807,
BC1001_5808,
BC1001_5809
View Structure
Genome:
Burkholderia sp. CCGE1001 chromosome II
(
NC_015137.1
);
Phylum:
Betaproteobacteria
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