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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
524824-524932
(+)
ZMP-ZTP
525098-526346 (+)
BC1001_0475
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BC1001_0475
Operon
DOOR ID:
808793
BC1001_0475,
BC1001_0476
View Structure
2
837953-838264
(+)
cobalamin
838351-840214 (+)
BC1001_0755
TonB-dependent receptor
BC1001_0755
Operon
DOOR ID:
808846
BC1001_0755,
BC1001_0756,
BC1001_0757,
BC1001_0758
View Structure
3
1180010-1180053
(+)
mini-ykkC
1180073-1180394 (+)
BC1001_1052
BC1001_1052
Single gene
DOOR ID:
3058313
BC1001_1052
View Structure
4
1533918-1534021
(-)
fluoride
1533462-1533843 (-)
BC1001_1348
Putative fluoride ion transporter CrcB
BC1001_1348
Operon
DOOR ID:
808958
BC1001_1347,
BC1001_1348
View Structure
5
2697218-2697336
(+)
TPP
2697466-2699398 (+)
BC1001_2368
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BC1001_2368
Single gene
DOOR ID:
3058885
BC1001_2368
View Structure
6
3073355-3073526
(+)
yybP-ykoY
3073582-3074155 (+)
BC1001_2694
BC1001_2694
Single gene
DOOR ID:
3059034
BC1001_2694
View Structure
7
3379549-3379733
(-)
FMN
3378678-3379395 (-)
BC1001_2969
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BC1001_2969
Single gene
DOOR ID:
3059163
BC1001_2969
View Structure
8
3649056-3649179
(-)
TPP
3647687-3648818 (-)
BC1001_3214
FAD dependent oxidoreductase
BC1001_3214
Operon
DOOR ID:
809319
BC1001_3213,
BC1001_3214
View Structure
9
3803888-3804026
(-)
SAH
3802433-3803855 (-)
BC1001_3360
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BC1001_3360
Single gene
DOOR ID:
3059304
BC1001_3360
View Structure
10
3895278-3895454
(-)
yybP-ykoY
3894161-3895172 (-)
BC1001_3448
Sodium/calcium exchanger membrane region
BC1001_3448
Single gene
DOOR ID:
3059326
BC1001_3448
View Structure
11
3936952-3937052
(+)
glycine
3937327-3938446 (+)
BC1001_3496
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1001_3496
Operon
DOOR ID:
809373
BC1001_3496,
BC1001_3497,
BC1001_3498
View Structure
12
3937095-3937248
(+)
glycine
3937327-3938446 (+)
BC1001_3496
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1001_3496
Operon
DOOR ID:
809373
BC1001_3496,
BC1001_3497,
BC1001_3498
View Structure
Genome:
Burkholderia sp. CCGE1001 chromosome I
(
NC_015136.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"524824-524932";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"525098-526346";i:10;s:1:"+";i:11;s:11:"BC1001_0475";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"BC1001_0475";i:14;s:6:"Operon";i:15;s:6:"808793";i:16;s:23:"BC1001_0475;BC1001_0476";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"837953-838264";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"838351-840214";i:10;s:1:"+";i:11;s:11:"BC1001_0755";i:12;s:23:"TonB-dependent receptor";i:13;s:11:"BC1001_0755";i:14;s:6:"Operon";i:15;s:6:"808846";i:16;s:47:"BC1001_0755;BC1001_0756;BC1001_0757;BC1001_0758";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1180010-1180053";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1180073-1180394";i:10;s:1:"+";i:11;s:11:"BC1001_1052";i:12;s:0:"";i:13;s:11:"BC1001_1052";i:14;s:11:"Single gene";i:15;s:7:"3058313";i:16;s:11:"BC1001_1052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1533918-1534021";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1533462-1533843";i:10;s:1:"-";i:11;s:11:"BC1001_1348";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"BC1001_1348";i:14;s:6:"Operon";i:15;s:6:"808958";i:16;s:23:"BC1001_1347;BC1001_1348";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2697218-2697336";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2697466-2699398";i:10;s:1:"+";i:11;s:11:"BC1001_2368";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"BC1001_2368";i:14;s:11:"Single gene";i:15;s:7:"3058885";i:16;s:11:"BC1001_2368";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3073355-3073526";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3073582-3074155";i:10;s:1:"+";i:11;s:11:"BC1001_2694";i:12;s:0:"";i:13;s:11:"BC1001_2694";i:14;s:11:"Single gene";i:15;s:7:"3059034";i:16;s:11:"BC1001_2694";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3379549-3379733";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3378678-3379395";i:10;s:1:"-";i:11;s:11:"BC1001_2969";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"BC1001_2969";i:14;s:11:"Single gene";i:15;s:7:"3059163";i:16;s:11:"BC1001_2969";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3649056-3649179";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3647687-3648818";i:10;s:1:"-";i:11;s:11:"BC1001_3214";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:11:"BC1001_3214";i:14;s:6:"Operon";i:15;s:6:"809319";i:16;s:23:"BC1001_3213;BC1001_3214";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3803888-3804026";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3802433-3803855";i:10;s:1:"-";i:11;s:11:"BC1001_3360";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"BC1001_3360";i:14;s:11:"Single gene";i:15;s:7:"3059304";i:16;s:11:"BC1001_3360";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3895278-3895454";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3894161-3895172";i:10;s:1:"-";i:11;s:11:"BC1001_3448";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:11:"BC1001_3448";i:14;s:11:"Single gene";i:15;s:7:"3059326";i:16;s:11:"BC1001_3448";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3936952-3937052";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3937327-3938446";i:10;s:1:"+";i:11;s:11:"BC1001_3496";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1001_3496";i:14;s:6:"Operon";i:15;s:6:"809373";i:16;s:35:"BC1001_3496;BC1001_3497;BC1001_3498";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015136.1";i:2;s:38:"Burkholderia sp. CCGE1001 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3937095-3937248";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3937327-3938446";i:10;s:1:"+";i:11;s:11:"BC1001_3496";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1001_3496";i:14;s:6:"Operon";i:15;s:6:"809373";i:16;s:35:"BC1001_3496;BC1001_3497;BC1001_3498";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}