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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
315436-315514
(-)
c-di-GMP-I
314731-315232 (-)
GM18_0258
Conserved repeat domain protein
GM18_0258
single gene
DOOR ID:
3047261
GM18_0258
View Structure
2
538580-538681
(-)
SAM
537375-538479 (-)
GM18_0426
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
GM18_0426
Single gene
DOOR ID:
3047321
GM18_0426
View Structure
3
786708-786808
(-)
TPP
785024-786482 (-)
GM18_0635
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
GM18_0635
Operon
DOOR ID:
803917
GM18_0634,
GM18_0635
View Structure
4
1114486-1114586
(-)
ykkC-yxkD
1112471-1114307 (+)
GM18_0935
Cytochrome c family protein
GM18_0935
Operon
DOOR ID:
803983
GM18_0932,
GM18_0933,
GM18_0934,
GM18_0935
View Structure
5
1214103-1214179
(-)
c-di-GMP-I
1211584-1213864 (-)
GM18_1006
Fibronectin type III domain-containing protein
GM18_1006
single gene
DOOR ID:
3047516
GM18_1006
View Structure
6
1214301-1214376
(-)
c-di-GMP-I
1211584-1213864 (-)
GM18_1006
Fibronectin type III domain-containing protein
GM18_1006
single gene
DOOR ID:
3047516
GM18_1006
View Structure
7
1280784-1280873
(+)
c-di-GMP-I
1280977-1281508 (-)
GM18_1059
Superoxide dismutase [Cu-Zn]
GM18_1059
single gene
DOOR ID:
3047549
GM18_1059
View Structure
8
1337425-1337504
(+)
c-di-GMP-I
1337573-1340708 (+)
GM18_1104
Transglutaminase domain-containing protein
GM18_1104
operon
DOOR ID:
804016
GM18_1104,
GM18_1105,
GM18_1106
View Structure
9
1462938-1463055
(-)
MOCO
1461174-1462905 (-)
GM18_1209
Aldehyde ferredoxin oxidoreductase
GM18_1209
Single gene
DOOR ID:
3047596
GM18_1209
View Structure
10
1576643-1576719
(-)
c-di-GMP-I
1576140-1576413 (-)
GM18_1298
Uncharacterized protein
GM18_1298
single gene
DOOR ID:
3047637
GM18_1298
View Structure
11
2017161-2017237
(+)
c-di-GMP-I
2017310-2018447 (+)
GM18_1663
Fibronectin type III domain protein
GM18_1663
single gene
DOOR ID:
3047755
GM18_1663
View Structure
12
2018597-2018673
(+)
c-di-GMP-I
2018771-2020073 (+)
GM18_1664
Fibronectin type III domain protein
GM18_1664
operon
DOOR ID:
804127
GM18_1664,
GM18_1665
View Structure
13
2349478-2349598
(-)
MOCO
2348184-2349399 (-)
GM18_1956
Molybdenum cofactor synthesis domain protein
GM18_1956
Operon
DOOR ID:
804193
GM18_1954,
GM18_1955,
GM18_1956
View Structure
14
2410035-2410141
(-)
SAM
2408820-2409966 (-)
GM18_2010
Cys/Met metabolism pyridoxal-phosphate-dependent protein
GM18_2010
Operon
DOOR ID:
804203
GM18_2009,
GM18_2010
View Structure
15
3146404-3146480
(+)
c-di-GMP-I
3146613-3146883 (+)
GM18_2638
Uncharacterized protein
GM18_2638
operon
DOOR ID:
804334
GM18_2638,
GM18_2639,
GM18_2640
View Structure
16
3785016-3785133
(-)
MOCO
3783243-3784980 (-)
GM18_3212
Aldehyde ferredoxin oxidoreductase
GM18_3212
Operon
DOOR ID:
804446
GM18_3207,
GM18_3208,
GM18_3209,
GM18_3210,
GM18_3211,
GM18_3212
View Structure
17
3835206-3835282
(-)
c-di-GMP-I
3833227-3835012 (-)
GM18_3261
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
GM18_3261
operon
DOOR ID:
804459
GM18_3259,
GM18_3260,
GM18_3261
View Structure
18
4032452-4032528
(+)
c-di-GMP-I
4032588-4034847 (+)
GM18_3454
Uncharacterized protein
GM18_3454
single gene
DOOR ID:
3048402
GM18_3454
View Structure
19
4141521-4141638
(-)
MOCO
4140676-4141420 (-)
GM18_3539
GM18_3539
Operon
DOOR ID:
804515
GM18_3538,
GM18_3539
View Structure
20
4501699-4501775
(-)
c-di-GMP-I
4501416-4501623 (-)
GM18_3844
Uncharacterized protein
GM18_3844
single gene
DOOR ID:
3048580
GM18_3844
View Structure
21
4751008-4751085
(-)
c-di-GMP-I
4750708-4750870 (-)
GM18_4038
Uncharacterized protein
GM18_4038
single gene
DOOR ID:
3048650
GM18_4038
View Structure
22
4751240-4751318
(-)
c-di-GMP-I
4750708-4750870 (-)
GM18_4038
Uncharacterized protein
GM18_4038
single gene
DOOR ID:
3048650
GM18_4038
View Structure
23
4751459-4751536
(-)
c-di-GMP-I
4750708-4750870 (-)
GM18_4038
Uncharacterized protein
GM18_4038
single gene
DOOR ID:
3048650
GM18_4038
View Structure
24
4988878-4989059
(-)
cobalamin
4988265-4988787 (-)
GM18_4244
Bifunctional adenosylcobalamin biosynthesis protein (2)
GM18_4244
Operon
DOOR ID:
804642
GM18_4235,
GM18_4236,
GM18_4237,
GM18_4238,
GM18_4239,
GM18_4240,
GM18_4241,
GM18_4242,
GM18_4243,
GM18_4244
View Structure
25
5044066-5044142
(-)
c-di-GMP-I
5041806-5043918 (-)
GM18_4302
Alpha-2-macroglobulin domain protein
GM18_4302
single gene
DOOR ID:
3048720
GM18_4302
View Structure
26
5044266-5044342
(-)
c-di-GMP-I
5041806-5043918 (-)
GM18_4302
Alpha-2-macroglobulin domain protein
GM18_4302
single gene
DOOR ID:
3048720
GM18_4302
View Structure
Genome:
Geobacter sp. M18
(
NC_014973.1
);
Phylum:
delta/epsilon subdivisions
a:27:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"315436-315514";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"314731-315232";i:10;s:1:"-";i:11;s:9:"GM18_0258";i:12;s:31:"Conserved repeat domain protein";i:13;s:9:"GM18_0258";i:14;s:11:"single gene";i:15;s:7:"3047261";i:16;s:9:"GM18_0258";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"538580-538681";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"537375-538479";i:10;s:1:"-";i:11;s:9:"GM18_0426";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"GM18_0426";i:14;s:11:"Single gene";i:15;s:7:"3047321";i:16;s:9:"GM18_0426";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"786708-786808";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"785024-786482";i:10;s:1:"-";i:11;s:9:"GM18_0635";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"GM18_0635";i:14;s:6:"Operon";i:15;s:6:"803917";i:16;s:19:"GM18_0634;GM18_0635";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1114486-1114586";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1112471-1114307";i:10;s:1:"+";i:11;s:9:"GM18_0935";i:12;s:27:"Cytochrome c family protein";i:13;s:9:"GM18_0935";i:14;s:6:"Operon";i:15;s:6:"803983";i:16;s:39:"GM18_0932;GM18_0933;GM18_0934;GM18_0935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1214103-1214179";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1211584-1213864";i:10;s:1:"-";i:11;s:9:"GM18_1006";i:12;s:46:"Fibronectin type III domain-containing protein";i:13;s:9:"GM18_1006";i:14;s:11:"single gene";i:15;s:7:"3047516";i:16;s:9:"GM18_1006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1214301-1214376";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1211584-1213864";i:10;s:1:"-";i:11;s:9:"GM18_1006";i:12;s:46:"Fibronectin type III domain-containing protein";i:13;s:9:"GM18_1006";i:14;s:11:"single gene";i:15;s:7:"3047516";i:16;s:9:"GM18_1006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1280784-1280873";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1280977-1281508";i:10;s:1:"-";i:11;s:9:"GM18_1059";i:12;s:29:"Superoxide dismutase [Cu-Zn] ";i:13;s:9:"GM18_1059";i:14;s:11:"single gene";i:15;s:7:"3047549";i:16;s:9:"GM18_1059";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1337425-1337504";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1337573-1340708";i:10;s:1:"+";i:11;s:9:"GM18_1104";i:12;s:42:"Transglutaminase domain-containing protein";i:13;s:9:"GM18_1104";i:14;s:6:"operon";i:15;s:6:"804016";i:16;s:29:"GM18_1104;GM18_1105;GM18_1106";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1462938-1463055";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1461174-1462905";i:10;s:1:"-";i:11;s:9:"GM18_1209";i:12;s:35:"Aldehyde ferredoxin oxidoreductase ";i:13;s:9:"GM18_1209";i:14;s:11:"Single gene";i:15;s:7:"3047596";i:16;s:9:"GM18_1209";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1576643-1576719";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1576140-1576413";i:10;s:1:"-";i:11;s:9:"GM18_1298";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM18_1298";i:14;s:11:"single gene";i:15;s:7:"3047637";i:16;s:9:"GM18_1298";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2017161-2017237";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2017310-2018447";i:10;s:1:"+";i:11;s:9:"GM18_1663";i:12;s:35:"Fibronectin type III domain protein";i:13;s:9:"GM18_1663";i:14;s:11:"single gene";i:15;s:7:"3047755";i:16;s:9:"GM18_1663";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2018597-2018673";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2018771-2020073";i:10;s:1:"+";i:11;s:9:"GM18_1664";i:12;s:35:"Fibronectin type III domain protein";i:13;s:9:"GM18_1664";i:14;s:6:"operon";i:15;s:6:"804127";i:16;s:19:"GM18_1664;GM18_1665";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2349478-2349598";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2348184-2349399";i:10;s:1:"-";i:11;s:9:"GM18_1956";i:12;s:44:"Molybdenum cofactor synthesis domain protein";i:13;s:9:"GM18_1956";i:14;s:6:"Operon";i:15;s:6:"804193";i:16;s:29:"GM18_1954;GM18_1955;GM18_1956";i:17;s:56:"molybdopterin cofactor biosynthetic process [GO:0032324]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2410035-2410141";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2408820-2409966";i:10;s:1:"-";i:11;s:9:"GM18_2010";i:12;s:56:"Cys/Met metabolism pyridoxal-phosphate-dependent protein";i:13;s:9:"GM18_2010";i:14;s:6:"Operon";i:15;s:6:"804203";i:16;s:19:"GM18_2009;GM18_2010";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3146404-3146480";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3146613-3146883";i:10;s:1:"+";i:11;s:9:"GM18_2638";i:12;s:23:"Uncharacterized protein";i:13;s:9:"GM18_2638";i:14;s:6:"operon";i:15;s:6:"804334";i:16;s:29:"GM18_2638;GM18_2639;GM18_2640";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3785016-3785133";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3783243-3784980";i:10;s:1:"-";i:11;s:9:"GM18_3212";i:12;s:35:"Aldehyde ferredoxin oxidoreductase ";i:13;s:9:"GM18_3212";i:14;s:6:"Operon";i:15;s:6:"804446";i:16;s:59:"GM18_3207;GM18_3208;GM18_3209;GM18_3210;GM18_3211;GM18_3212";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. M18 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3835206-3835282";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3833227-3835012";i:10;s:1:"-";i:11;s:9:"GM18_3261";i:12;s:60:"Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)";i:13;s:9:"GM18_3261";i:14;s:6:"operon";i:15;s:6:"804459";i:16;s:29:"GM18_3259;GM18_3260;GM18_3261";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014973.1";i:2;s:18:"Geobacter sp. 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