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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
277631-277813
(+)
cobalamin
278381-280442 (+)
Despr_0283
Putative serine protein kinase; PrkA
Despr_0283
Operon
DOOR ID:
803137
Despr_0283,
Despr_0284,
Despr_0285,
Despr_0286
View Structure
2
630002-630135
(+)
cobalamin
630255-630834 (+)
Despr_0586
Bifunctional adenosylcobalamin biosynthesis protein (2)
Despr_0586
Operon
DOOR ID:
803199
Despr_0586,
Despr_0587,
Despr_0588,
Despr_0589,
Despr_0590
View Structure
3
1580258-1580440
(+)
cobalamin
1580993-1582997 (+)
Despr_1392
TonB-dependent receptor
Despr_1392
Single gene
DOOR ID:
3046479
Despr_1392
View Structure
4
1717993-1718176
(+)
cobalamin
1718497-1718917 (+)
Despr_1505
Outer membrane transport energization protein ExbB
Despr_1505
Operon
DOOR ID:
803396
Despr_1505,
Despr_1506,
Despr_1507
View Structure
5
1829363-1829443
(-)
c-di-GMP-I
1825964-1829195 (-)
Despr_1593
Outer membrane autotransporter barrel domain protein
Despr_1593
single gene
DOOR ID:
3046534
Despr_1593
View Structure
6
2205151-2205241
(+)
TPP
2205329-2205527 (+)
Despr_1924
Thiamine biosynthesis protein ThiS
Despr_1924
Operon
DOOR ID:
803491
Despr_1924,
Despr_1925,
Despr_1926,
Despr_1927,
Despr_1928,
Despr_1929
View Structure
7
2212775-2212924
(+)
FMN
2213110-2213773 (+)
Despr_1932
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Despr_1932
Single gene
DOOR ID:
3046645
Despr_1932
View Structure
8
3329294-3329426
(+)
ydaO-yuaA
3329476-3331399 (+)
Despr_2887
Probable potassium transport system protein kup
Despr_2887
Single gene
DOOR ID:
3047003
Despr_2887
View Structure
9
3489749-3489930
(-)
cobalamin
3488680-3489583 (-)
Despr_3029
Sirohydrochlorin cobaltochelatase
Despr_3029
Operon
DOOR ID:
803715
Despr_3019,
Despr_3020,
Despr_3021,
Despr_3022,
Despr_3023,
Despr_3024,
Despr_3025,
Despr_3026,
Despr_3027,
Despr_3028,
Despr_3029
View Structure
10
3550077-3550263
(-)
cobalamin
3547802-3549938 (-)
Despr_3086
Methylmalonyl-CoA mutase
Despr_3086
Operon
DOOR ID:
803731
Despr_3084,
Despr_3085,
Despr_3086
View Structure
11
3550423-3550603
(-)
cobalamin
3547802-3549938 (-)
Despr_3086
Methylmalonyl-CoA mutase
Despr_3086
Operon
DOOR ID:
803731
Despr_3084,
Despr_3085,
Despr_3086
View Structure
12
3572376-3572580
(-)
cobalamin
3570156-3572259 (-)
Despr_3104
TonB-dependent receptor
Despr_3104
Single gene
DOOR ID:
3047072
Despr_3104
View Structure
13
3589525-3589711
(-)
cobalamin
3588445-3589231 (-)
Despr_3116
Cytochrome c assembly protein
Despr_3116
Operon
DOOR ID:
803737
Despr_3108,
Despr_3109,
Despr_3110,
Despr_3111,
Despr_3112,
Despr_3113,
Despr_3114,
Despr_3115,
Despr_3116
View Structure
14
3592867-3593056
(-)
cobalamin
3592105-3592537 (-)
Despr_3120
Outer membrane transport energization protein ExbB
Despr_3120
Operon
DOOR ID:
803738
Despr_3119,
Despr_3120
View Structure
15
3593282-3593466
(+)
cobalamin
3593606-3594029 (+)
Despr_3121
Despr_3121
Operon
DOOR ID:
803739
Despr_3121,
Despr_3122,
Despr_3123
View Structure
16
3694637-3694819
(+)
cobalamin
3695029-3695935 (+)
Despr_3214
Sirohydrochlorin cobaltochelatase
Despr_3214
Single gene
DOOR ID:
3047105
Despr_3214
View Structure
17
3795505-3795646
(+)
cobalamin
3795998-3797132 (+)
Despr_3298
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Despr_3298
Single gene
DOOR ID:
3047132
Despr_3298
View Structure
Genome:
Desulfobulbus propionicus DSM 2032
(
NC_014972.1
);
Phylum:
delta/epsilon subdivisions
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"277631-277813";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"278381-280442";i:10;s:1:"+";i:11;s:10:"Despr_0283";i:12;s:36:"Putative serine protein kinase; PrkA";i:13;s:10:"Despr_0283";i:14;s:6:"Operon";i:15;s:6:"803137";i:16;s:43:"Despr_0283;Despr_0284;Despr_0285;Despr_0286";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"630002-630135";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"630255-630834";i:10;s:1:"+";i:11;s:10:"Despr_0586";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:10:"Despr_0586";i:14;s:6:"Operon";i:15;s:6:"803199";i:16;s:54:"Despr_0586;Despr_0587;Despr_0588;Despr_0589;Despr_0590";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1580258-1580440";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1580993-1582997";i:10;s:1:"+";i:11;s:10:"Despr_1392";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Despr_1392";i:14;s:11:"Single gene";i:15;s:7:"3046479";i:16;s:10:"Despr_1392";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1717993-1718176";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1718497-1718917";i:10;s:1:"+";i:11;s:10:"Despr_1505";i:12;s:50:"Outer membrane transport energization protein ExbB";i:13;s:10:"Despr_1505";i:14;s:6:"Operon";i:15;s:6:"803396";i:16;s:32:"Despr_1505;Despr_1506;Despr_1507";i:17;s:68:"protein transport [GO:0015031]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1829363-1829443";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1825964-1829195";i:10;s:1:"-";i:11;s:10:"Despr_1593";i:12;s:52:"Outer membrane autotransporter barrel domain protein";i:13;s:10:"Despr_1593";i:14;s:11:"single gene";i:15;s:7:"3046534";i:16;s:10:"Despr_1593";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2205151-2205241";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2205329-2205527";i:10;s:1:"+";i:11;s:10:"Despr_1924";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Despr_1924";i:14;s:6:"Operon";i:15;s:6:"803491";i:16;s:65:"Despr_1924;Despr_1925;Despr_1926;Despr_1927;Despr_1928;Despr_1929";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2212775-2212924";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2213110-2213773";i:10;s:1:"+";i:11;s:10:"Despr_1932";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Despr_1932";i:14;s:11:"Single gene";i:15;s:7:"3046645";i:16;s:10:"Despr_1932";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3329294-3329426";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3329476-3331399";i:10;s:1:"+";i:11;s:10:"Despr_2887";i:12;s:47:"Probable potassium transport system protein kup";i:13;s:10:"Despr_2887";i:14;s:11:"Single gene";i:15;s:7:"3047003";i:16;s:10:"Despr_2887";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3489749-3489930";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3488680-3489583";i:10;s:1:"-";i:11;s:10:"Despr_3029";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:10:"Despr_3029";i:14;s:6:"Operon";i:15;s:6:"803715";i:16;s:120:"Despr_3019;Despr_3020;Despr_3021;Despr_3022;Despr_3023;Despr_3024;Despr_3025;Despr_3026;Despr_3027;Despr_3028;Despr_3029";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3550077-3550263";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:6:"Tandem";i:9;s:15:"3547802-3549938";i:10;s:1:"-";i:11;s:10:"Despr_3086";i:12;s:25:"Methylmalonyl-CoA mutase ";i:13;s:10:"Despr_3086";i:14;s:6:"Operon";i:15;s:6:"803731";i:16;s:32:"Despr_3084;Despr_3085;Despr_3086";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3550423-3550603";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:6:"Tandem";i:9;s:15:"3547802-3549938";i:10;s:1:"-";i:11;s:10:"Despr_3086";i:12;s:25:"Methylmalonyl-CoA mutase ";i:13;s:10:"Despr_3086";i:14;s:6:"Operon";i:15;s:6:"803731";i:16;s:32:"Despr_3084;Despr_3085;Despr_3086";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3572376-3572580";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3570156-3572259";i:10;s:1:"-";i:11;s:10:"Despr_3104";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Despr_3104";i:14;s:11:"Single gene";i:15;s:7:"3047072";i:16;s:10:"Despr_3104";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3589525-3589711";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3588445-3589231";i:10;s:1:"-";i:11;s:10:"Despr_3116";i:12;s:29:"Cytochrome c assembly protein";i:13;s:10:"Despr_3116";i:14;s:6:"Operon";i:15;s:6:"803737";i:16;s:98:"Despr_3108;Despr_3109;Despr_3110;Despr_3111;Despr_3112;Despr_3113;Despr_3114;Despr_3115;Despr_3116";i:17;s:40:"cytochrome complex assembly [GO:0017004]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3592867-3593056";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3592105-3592537";i:10;s:1:"-";i:11;s:10:"Despr_3120";i:12;s:50:"Outer membrane transport energization protein ExbB";i:13;s:10:"Despr_3120";i:14;s:6:"Operon";i:15;s:6:"803738";i:16;s:21:"Despr_3119;Despr_3120";i:17;s:68:"protein transport [GO:0015031]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3593282-3593466";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3593606-3594029";i:10;s:1:"+";i:11;s:10:"Despr_3121";i:12;s:0:"";i:13;s:10:"Despr_3121";i:14;s:6:"Operon";i:15;s:6:"803739";i:16;s:32:"Despr_3121;Despr_3122;Despr_3123";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3694637-3694819";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3695029-3695935";i:10;s:1:"+";i:11;s:10:"Despr_3214";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:10:"Despr_3214";i:14;s:11:"Single gene";i:15;s:7:"3047105";i:16;s:10:"Despr_3214";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014972.1";i:2;s:35:"Desulfobulbus propionicus DSM 2032 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3795505-3795646";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3795998-3797132";i:10;s:1:"+";i:11;s:10:"Despr_3298";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:10:"Despr_3298";i:14;s:11:"Single gene";i:15;s:7:"3047132";i:16;s:10:"Despr_3298";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}}