About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
229248-229389
(+)
cobalamin
229511-229709 (+)
Deima_0199
Deima_0199
Operon
DOOR ID:
798360
Deima_0199,
Deima_0200,
Deima_0201,
Deima_0202,
Deima_0203,
Deima_0204,
Deima_0205,
Deima_0206,
Deima_0207,
Deima_0208,
Deima_0209,
Deima_0210,
Deima_0211
View Structure
2
314698-314782
(+)
c-di-GMP-II
314810-315338 (+)
Deima_0270
Deima_0270
Single gene
DOOR ID:
3037114
Deima_0270
View Structure
3
388333-388413
(+)
c-di-GMP-II
388499-390428 (+)
Deima_0334
Deima_0334
Single gene
DOOR ID:
3037143
Deima_0334
View Structure
4
420644-420719
(-)
c-di-GMP-I
419880-420630 (-)
Deima_0356
Glycoside hydrolase family 16
Deima_0356
single gene
DOOR ID:
3037156
Deima_0356
View Structure
5
445427-445510
(+)
c-di-GMP-II
445571-446702 (+)
Deima_0381
Deima_0381
Single gene
DOOR ID:
3037166
Deima_0381
View Structure
6
471734-471849
(+)
yybP-ykoY
471923-472925 (+)
Deima_0403
Integral membrane protein; TerC family
Deima_0403
Single gene
DOOR ID:
3037177
Deima_0403
View Structure
7
981986-982086
(-)
TPP
980912-981923 (-)
Deima_0888
ABC transporter; periplasmic binding protein; thiB subfamily
Deima_0888
Operon
DOOR ID:
798510
Deima_0886,
Deima_0887,
Deima_0888
View Structure
8
1046404-1046488
(+)
c-di-GMP-II
1046536-1047022 (+)
Deima_0952
Deima_0952
Single gene
DOOR ID:
3037390
Deima_0952
View Structure
9
1212728-1212850
(-)
SAM
1211652-1212615 (-)
Deima_1109
Phosphonate-transporting ATPase (8)
Deima_1109
Operon
DOOR ID:
798562
Deima_1106,
Deima_1107,
Deima_1108,
Deima_1109
View Structure
10
2009748-2009832
(-)
c-di-GMP-II
2008633-2009707 (-)
Deima_1867
Peptidase S8 and S53 subtilisin kexin sedolisin
Deima_1867
Operon
DOOR ID:
798732
Deima_1866,
Deima_1867
View Structure
11
2036870-2036995
(-)
SAM
2035744-2036746 (-)
Deima_1892
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Deima_1892
Single gene
DOOR ID:
3037717
Deima_1892
View Structure
12
2051425-2051510
(+)
ZMP-ZTP
2051556-2053089 (+)
Deima_1904
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Deima_1904
Operon
DOOR ID:
798740
Deima_1904,
Deima_1905
View Structure
13
2076132-2076201
(-)
ykkC-III
2075792-2076113 (-)
Deima_1925
Deima_1925
single gene
DOOR ID:
3037729
Deima_1925
View Structure
14
2269590-2269732
(-)
cobalamin
2268600-2269464 (-)
Deima_2097
ABC-type transporter; periplasmic subunit
Deima_2097
Operon
DOOR ID:
798779
Deima_2096,
Deima_2097
View Structure
15
2352368-2352449
(+)
c-di-GMP-II
2352694-2353183 (+)
Deima_2179
Deima_2179
Operon
DOOR ID:
798799
Deima_2179,
Deima_2180,
Deima_2181
View Structure
16
2391456-2391570
(-)
TPP
2389479-2391381 (-)
Deima_2212
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Deima_2212
Operon
DOOR ID:
798805
Deima_2208,
Deima_2209,
Deima_2210,
Deima_2211,
Deima_2212
View Structure
17
2923673-2923878
(-)
FMN
2922482-2923544 (-)
Deima_2739
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Deima_2739
Operon
DOOR ID:
798934
Deima_2736,
Deima_2737,
Deima_2738,
Deima_2739
View Structure
18
3370213-3370343
(-)
cobalamin
3369234-3370122 (-)
Deima_3180
ABC-type transporter; periplasmic subunit
Deima_3180
Single gene
DOOR ID:
3038159
Deima_3180
View Structure
Genome:
Deinococcus maricopensis DSM 21211
(
NC_014958.1
);
Phylum:
Deinococcus-Thermus
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"229248-229389";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"229511-229709";i:10;s:1:"+";i:11;s:10:"Deima_0199";i:12;s:0:"";i:13;s:10:"Deima_0199";i:14;s:6:"Operon";i:15;s:6:"798360";i:16;s:142:"Deima_0199;Deima_0200;Deima_0201;Deima_0202;Deima_0203;Deima_0204;Deima_0205;Deima_0206;Deima_0207;Deima_0208;Deima_0209;Deima_0210;Deima_0211";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"314698-314782";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"314810-315338";i:10;s:1:"+";i:11;s:10:"Deima_0270";i:12;s:0:"";i:13;s:10:"Deima_0270";i:14;s:11:"Single gene";i:15;s:7:"3037114";i:16;s:10:"Deima_0270";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"388333-388413";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"388499-390428";i:10;s:1:"+";i:11;s:10:"Deima_0334";i:12;s:0:"";i:13;s:10:"Deima_0334";i:14;s:11:"Single gene";i:15;s:7:"3037143";i:16;s:10:"Deima_0334";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"420644-420719";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"419880-420630";i:10;s:1:"-";i:11;s:10:"Deima_0356";i:12;s:29:"Glycoside hydrolase family 16";i:13;s:10:"Deima_0356";i:14;s:11:"single gene";i:15;s:7:"3037156";i:16;s:10:"Deima_0356";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"445427-445510";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"445571-446702";i:10;s:1:"+";i:11;s:10:"Deima_0381";i:12;s:0:"";i:13;s:10:"Deima_0381";i:14;s:11:"Single gene";i:15;s:7:"3037166";i:16;s:10:"Deima_0381";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"471734-471849";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"471923-472925";i:10;s:1:"+";i:11;s:10:"Deima_0403";i:12;s:38:"Integral membrane protein; TerC family";i:13;s:10:"Deima_0403";i:14;s:11:"Single gene";i:15;s:7:"3037177";i:16;s:10:"Deima_0403";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"981986-982086";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"980912-981923";i:10;s:1:"-";i:11;s:10:"Deima_0888";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:10:"Deima_0888";i:14;s:6:"Operon";i:15;s:6:"798510";i:16;s:32:"Deima_0886;Deima_0887;Deima_0888";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1046404-1046488";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"1046536-1047022";i:10;s:1:"+";i:11;s:10:"Deima_0952";i:12;s:0:"";i:13;s:10:"Deima_0952";i:14;s:11:"Single gene";i:15;s:7:"3037390";i:16;s:10:"Deima_0952";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1212728-1212850";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1211652-1212615";i:10;s:1:"-";i:11;s:10:"Deima_1109";i:12;s:35:"Phosphonate-transporting ATPase (8)";i:13;s:10:"Deima_1109";i:14;s:6:"Operon";i:15;s:6:"798562";i:16;s:43:"Deima_1106;Deima_1107;Deima_1108;Deima_1109";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2009748-2009832";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2008633-2009707";i:10;s:1:"-";i:11;s:10:"Deima_1867";i:12;s:47:"Peptidase S8 and S53 subtilisin kexin sedolisin";i:13;s:10:"Deima_1867";i:14;s:6:"Operon";i:15;s:6:"798732";i:16;s:21:"Deima_1866;Deima_1867";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2036870-2036995";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2035744-2036746";i:10;s:1:"-";i:11;s:10:"Deima_1892";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Deima_1892";i:14;s:11:"Single gene";i:15;s:7:"3037717";i:16;s:10:"Deima_1892";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2051425-2051510";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2051556-2053089";i:10;s:1:"+";i:11;s:10:"Deima_1904";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:10:"Deima_1904";i:14;s:6:"Operon";i:15;s:6:"798740";i:16;s:21:"Deima_1904;Deima_1905";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2076132-2076201";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2075792-2076113";i:10;s:1:"-";i:11;s:10:"Deima_1925";i:12;s:0:"";i:13;s:10:"Deima_1925";i:14;s:11:"single gene";i:15;s:7:"3037729";i:16;s:10:"Deima_1925";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2269590-2269732";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2268600-2269464";i:10;s:1:"-";i:11;s:10:"Deima_2097";i:12;s:41:"ABC-type transporter; periplasmic subunit";i:13;s:10:"Deima_2097";i:14;s:6:"Operon";i:15;s:6:"798779";i:16;s:21:"Deima_2096;Deima_2097";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2352368-2352449";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2352694-2353183";i:10;s:1:"+";i:11;s:10:"Deima_2179";i:12;s:0:"";i:13;s:10:"Deima_2179";i:14;s:6:"Operon";i:15;s:6:"798799";i:16;s:32:"Deima_2179;Deima_2180;Deima_2181";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2391456-2391570";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2389479-2391381";i:10;s:1:"-";i:11;s:10:"Deima_2212";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Deima_2212";i:14;s:6:"Operon";i:15;s:6:"798805";i:16;s:54:"Deima_2208;Deima_2209;Deima_2210;Deima_2211;Deima_2212";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2923673-2923878";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2922482-2923544";i:10;s:1:"-";i:11;s:10:"Deima_2739";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Deima_2739";i:14;s:6:"Operon";i:15;s:6:"798934";i:16;s:43:"Deima_2736;Deima_2737;Deima_2738;Deima_2739";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014958.1";i:2;s:35:"Deinococcus maricopensis DSM 21211 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"3370213-3370343";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3369234-3370122";i:10;s:1:"-";i:11;s:10:"Deima_3180";i:12;s:41:"ABC-type transporter; periplasmic subunit";i:13;s:10:"Deima_3180";i:14;s:11:"Single gene";i:15;s:7:"3038159";i:16;s:10:"Deima_3180";i:17;s:0:"";i:18;s:15:"View Structure ";}}