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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
54474-54576
(-)
TPP
53276-54383 (-)
SPSINT_0054
SPSINT_0054
Operon
DOOR ID:
793782
SPSINT_0053,
SPSINT_0054
View Structure
2
56837-56939
(+)
purine
57122-57707 (+)
SPSINT_0058
SPSINT_0058
Operon
DOOR ID:
793783
SPSINT_0058,
SPSINT_0059,
SPSINT_0060,
SPSINT_0061
View Structure
3
415439-415547
(+)
TPP
415624-416215 (+)
SPSINT_0375
SPSINT_0375
Operon
DOOR ID:
793850
SPSINT_0375,
SPSINT_0376,
SPSINT_0377,
SPSINT_0378,
SPSINT_0379,
SPSINT_0380
View Structure
4
457565-457612
(-)
PreQ1
456817-457486 (-)
SPSINT_0421
SPSINT_0421
Operon
DOOR ID:
793861
SPSINT_0419,
SPSINT_0420,
SPSINT_0421
View Structure
5
572802-572911
(+)
SAM
573006-574035 (+)
SPSINT_0531
SPSINT_0531
Operon
DOOR ID:
793885
SPSINT_0528,
SPSINT_0529,
SPSINT_0530,
SPSINT_0531,
SPSINT_0532,
SPSINT_0533,
SPSINT_0534
View Structure
6
747540-747650
(+)
yybP-ykoY
747789-748593 (+)
SPSINT_0717
SPSINT_0717
Single gene
DOOR ID:
3030928
SPSINT_0717
View Structure
7
826372-826471
(-)
TPP
825671-826247 (-)
SPSINT_0784
SPSINT_0784
Operon
DOOR ID:
793933
SPSINT_0782,
SPSINT_0783,
SPSINT_0784
View Structure
8
1177514-1177693
(+)
lysine
1177897-1178884 (+)
SPSINT_1104
SPSINT_1104
Operon
DOOR ID:
793996
SPSINT_1104,
SPSINT_1105,
SPSINT_1106,
SPSINT_1107
View Structure
9
1258951-1259089
(-)
FMN
1258339-1258885 (-)
SPSINT_1185
SPSINT_1185
Single gene
DOOR ID:
3031094
SPSINT_1185
View Structure
10
1304496-1304591
(-)
glycine
1303328-1304420 (-)
SPSINT_1233
SPSINT_1233
Operon
DOOR ID:
794029
SPSINT_1231,
SPSINT_1232,
SPSINT_1233
View Structure
11
1486035-1486206
(-)
lysine
1484390-1485899 (-)
SPSINT_1440
SPSINT_1440
Operon
DOOR ID:
794068
SPSINT_1437,
SPSINT_1438,
SPSINT_1439,
SPSINT_1440
View Structure
12
1594665-1594799
(-)
FMN
1593472-1594519 (-)
SPSINT_1537
SPSINT_1537
Operon
DOOR ID:
794092
SPSINT_1534,
SPSINT_1535,
SPSINT_1536,
SPSINT_1537
View Structure
13
1605191-1605302
(-)
SAM
1603886-1605086 (-)
SPSINT_1550
SPSINT_1550
Single gene
DOOR ID:
3031190
SPSINT_1550
View Structure
14
1836982-1837085
(-)
TPP
1836231-1836915 (-)
SPSINT_1757
SPSINT_1757
Operon
DOOR ID:
794141
SPSINT_1754,
SPSINT_1755,
SPSINT_1756,
SPSINT_1757
View Structure
15
1877547-1877652
(-)
SAM
1876263-1877445 (-)
SPSINT_1802
SPSINT_1802
Operon
DOOR ID:
794150
SPSINT_1801,
SPSINT_1802
View Structure
16
1893482-1893696
(-)
glmS
1891555-1893358 (-)
SPSINT_1818
SPSINT_1818
Single gene
DOOR ID:
3031288
SPSINT_1818
View Structure
17
2357919-2358021
(-)
TPP
2355985-2357722 (-)
SPSINT_2243
SPSINT_2243
Single gene
DOOR ID:
3031488
SPSINT_2243
View Structure
18
2386669-2386769
(-)
SAM
2385243-2386623 (-)
SPSINT_2264
SPSINT_2264
Operon
DOOR ID:
794226
SPSINT_2261,
SPSINT_2262,
SPSINT_2263,
SPSINT_2264
View Structure
19
2388268-2388366
(-)
SAM
2386926-2388204 (-)
SPSINT_2266
SPSINT_2266
Single gene
DOOR ID:
3031502
SPSINT_2266
View Structure
20
2601657-2601761
(-)
SAM
2600607-2601573 (-)
SPSINT_2440
SPSINT_2440
Single gene
DOOR ID:
3031570
SPSINT_2440
View Structure
Genome:
Staphylococcus pseudintermedius HKU10-03
(
NC_014925.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1177514-1177693";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1177897-1178884";i:10;s:1:"+";i:11;s:11:"SPSINT_1104";i:12;s:0:"";i:13;s:11:"SPSINT_1104";i:14;s:6:"Operon";i:15;s:6:"793996";i:16;s:47:"SPSINT_1104;SPSINT_1105;SPSINT_1106;SPSINT_1107";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1258951-1259089";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1258339-1258885";i:10;s:1:"-";i:11;s:11:"SPSINT_1185";i:12;s:0:"";i:13;s:11:"SPSINT_1185";i:14;s:11:"Single gene";i:15;s:7:"3031094";i:16;s:11:"SPSINT_1185";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1304496-1304591";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1303328-1304420";i:10;s:1:"-";i:11;s:11:"SPSINT_1233";i:12;s:0:"";i:13;s:11:"SPSINT_1233";i:14;s:6:"Operon";i:15;s:6:"794029";i:16;s:35:"SPSINT_1231;SPSINT_1232;SPSINT_1233";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1486035-1486206";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1484390-1485899";i:10;s:1:"-";i:11;s:11:"SPSINT_1440";i:12;s:0:"";i:13;s:11:"SPSINT_1440";i:14;s:6:"Operon";i:15;s:6:"794068";i:16;s:47:"SPSINT_1437;SPSINT_1438;SPSINT_1439;SPSINT_1440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1594665-1594799";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1593472-1594519";i:10;s:1:"-";i:11;s:11:"SPSINT_1537";i:12;s:0:"";i:13;s:11:"SPSINT_1537";i:14;s:6:"Operon";i:15;s:6:"794092";i:16;s:47:"SPSINT_1534;SPSINT_1535;SPSINT_1536;SPSINT_1537";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1605191-1605302";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1603886-1605086";i:10;s:1:"-";i:11;s:11:"SPSINT_1550";i:12;s:0:"";i:13;s:11:"SPSINT_1550";i:14;s:11:"Single gene";i:15;s:7:"3031190";i:16;s:11:"SPSINT_1550";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1836982-1837085";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1836231-1836915";i:10;s:1:"-";i:11;s:11:"SPSINT_1757";i:12;s:0:"";i:13;s:11:"SPSINT_1757";i:14;s:6:"Operon";i:15;s:6:"794141";i:16;s:47:"SPSINT_1754;SPSINT_1755;SPSINT_1756;SPSINT_1757";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1877547-1877652";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1876263-1877445";i:10;s:1:"-";i:11;s:11:"SPSINT_1802";i:12;s:0:"";i:13;s:11:"SPSINT_1802";i:14;s:6:"Operon";i:15;s:6:"794150";i:16;s:23:"SPSINT_1801;SPSINT_1802";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1893482-1893696";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1891555-1893358";i:10;s:1:"-";i:11;s:11:"SPSINT_1818";i:12;s:0:"";i:13;s:11:"SPSINT_1818";i:14;s:11:"Single gene";i:15;s:7:"3031288";i:16;s:11:"SPSINT_1818";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2357919-2358021";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2355985-2357722";i:10;s:1:"-";i:11;s:11:"SPSINT_2243";i:12;s:0:"";i:13;s:11:"SPSINT_2243";i:14;s:11:"Single gene";i:15;s:7:"3031488";i:16;s:11:"SPSINT_2243";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2386669-2386769";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2385243-2386623";i:10;s:1:"-";i:11;s:11:"SPSINT_2264";i:12;s:0:"";i:13;s:11:"SPSINT_2264";i:14;s:6:"Operon";i:15;s:6:"794226";i:16;s:47:"SPSINT_2261;SPSINT_2262;SPSINT_2263;SPSINT_2264";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2388268-2388366";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2386926-2388204";i:10;s:1:"-";i:11;s:11:"SPSINT_2266";i:12;s:0:"";i:13;s:11:"SPSINT_2266";i:14;s:11:"Single gene";i:15;s:7:"3031502";i:16;s:11:"SPSINT_2266";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_014925.1";i:2;s:41:"Staphylococcus pseudintermedius HKU10-03 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2601657-2601761";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2600607-2601573";i:10;s:1:"-";i:11;s:11:"SPSINT_2440";i:12;s:0:"";i:13;s:11:"SPSINT_2440";i:14;s:11:"Single gene";i:15;s:7:"3031570";i:16;s:11:"SPSINT_2440";i:17;s:0:"";i:18;s:15:"View Structure ";}}