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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
62379-62595
(+)
cobalamin
62770-65215 (+)
Psesu_0053
Ribonucleoside-diphosphate reductase
Psesu_0053
Single gene
DOOR ID:
3029686
Psesu_0053
View Structure
2
208084-208166
(-)
yybP-ykoY
207051-207798 (-)
Psesu_0186
Integral membrane protein TerC
Psesu_0186
Single gene
DOOR ID:
3029739
Psesu_0186
View Structure
3
495207-495312
(+)
TPP
495422-497300 (+)
Psesu_0451
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Psesu_0451
Single gene
DOOR ID:
3029810
Psesu_0451
View Structure
4
545303-545419
(-)
SAH
543825-545271 (-)
Psesu_0495
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Psesu_0495
Single gene
DOOR ID:
3029829
Psesu_0495
View Structure
5
695289-695470
(+)
FMN
695610-696231 (+)
Psesu_0621
Riboflavin synthase; alpha subunit
Psesu_0621
Operon
DOOR ID:
793252
Psesu_0621,
Psesu_0622,
Psesu_0623,
Psesu_0624,
Psesu_0625
View Structure
6
851074-851192
(+)
SAM
851271-852270 (+)
Psesu_0758
Homoserine O-acetyltransferase (1)
Psesu_0758
Operon
DOOR ID:
793280
Psesu_0758,
Psesu_0759,
Psesu_0760
View Structure
7
1975371-1975404
(-)
SAH
1973906-1974785 (-)
Psesu_1790
Licheninase (3)
Psesu_1790
Single gene
DOOR ID:
3030197
Psesu_1790
View Structure
8
2376237-2376358
(+)
glycine
2376406-2379274 (+)
Psesu_2166
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Psesu_2166
Single gene
DOOR ID:
3030334
Psesu_2166
View Structure
9
2715389-2715624
(+)
cobalamin
2715751-2717614 (+)
Psesu_2475
TonB-dependent vitamin B12 receptor
Psesu_2475
Single gene
DOOR ID:
3030438
Psesu_2475
View Structure
10
2734148-2734380
(+)
cobalamin
2734585-2736871 (+)
Psesu_2487
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Psesu_2487
Single gene
DOOR ID:
3030443
Psesu_2487
View Structure
11
3064128-3064235
(+)
yybP-ykoY
3064298-3064874 (+)
Psesu_2813
Putative manganese efflux pump MntP
Psesu_2813
Single gene
DOOR ID:
3030572
Psesu_2813
View Structure
Genome:
Pseudoxanthomonas suwonensis 11-1
(
NC_014924.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"545303-545419";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"543825-545271";i:10;s:1:"-";i:11;s:10:"Psesu_0495";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Psesu_0495";i:14;s:11:"Single gene";i:15;s:7:"3029829";i:16;s:10:"Psesu_0495";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"695289-695470";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"695610-696231";i:10;s:1:"+";i:11;s:10:"Psesu_0621";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:10:"Psesu_0621";i:14;s:6:"Operon";i:15;s:6:"793252";i:16;s:54:"Psesu_0621;Psesu_0622;Psesu_0623;Psesu_0624;Psesu_0625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"851074-851192";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"851271-852270";i:10;s:1:"+";i:11;s:10:"Psesu_0758";i:12;s:34:"Homoserine O-acetyltransferase (1)";i:13;s:10:"Psesu_0758";i:14;s:6:"Operon";i:15;s:6:"793280";i:16;s:32:"Psesu_0758;Psesu_0759;Psesu_0760";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1975371-1975404";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1973906-1974785";i:10;s:1:"-";i:11;s:10:"Psesu_1790";i:12;s:15:"Licheninase (3)";i:13;s:10:"Psesu_1790";i:14;s:11:"Single gene";i:15;s:7:"3030197";i:16;s:10:"Psesu_1790";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2376237-2376358";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2376406-2379274";i:10;s:1:"+";i:11;s:10:"Psesu_2166";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Psesu_2166";i:14;s:11:"Single gene";i:15;s:7:"3030334";i:16;s:10:"Psesu_2166";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2715389-2715624";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2715751-2717614";i:10;s:1:"+";i:11;s:10:"Psesu_2475";i:12;s:35:"TonB-dependent vitamin B12 receptor";i:13;s:10:"Psesu_2475";i:14;s:11:"Single gene";i:15;s:7:"3030438";i:16;s:10:"Psesu_2475";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2734148-2734380";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2734585-2736871";i:10;s:1:"+";i:11;s:10:"Psesu_2487";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"Psesu_2487";i:14;s:11:"Single gene";i:15;s:7:"3030443";i:16;s:10:"Psesu_2487";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014924.1";i:2;s:34:"Pseudoxanthomonas suwonensis 11-1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3064128-3064235";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3064298-3064874";i:10;s:1:"+";i:11;s:10:"Psesu_2813";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Psesu_2813";i:14;s:11:"Single gene";i:15;s:7:"3030572";i:16;s:10:"Psesu_2813";i:17;s:0:"";i:18;s:15:"View Structure ";}}
