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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440546-440748
(+)
cobalamin
440862-442110 (+)
Mesci_0398
Rieske (2Fe-2S) iron-sulfur domain
Mesci_0398
Operon
DOOR ID:
792054
Mesci_0398,
Mesci_0399
View Structure
2
636790-636837
(-)
mini-ykkC
636407-636722 (-)
Mesci_0595
Mesci_0595
Single gene
DOOR ID:
3027453
Mesci_0595
View Structure
3
680991-681060
(+)
SAH
682119-682878 (+)
Mesci_0645
Short-chain dehydrogenase/reductase SDR
Mesci_0645
Single gene
DOOR ID:
3027476
Mesci_0645
View Structure
4
1369056-1369170
(+)
TPP
1369213-1370212 (+)
Mesci_1313
ABC transporter; periplasmic binding protein; thiB subfamily
Mesci_1313
Operon
DOOR ID:
792240
Mesci_1313,
Mesci_1314,
Mesci_1315
View Structure
5
1594822-1594899
(-)
sam-alpha
1593537-1594707 (-)
Mesci_1536
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Mesci_1536
Operon
DOOR ID:
792281
Mesci_1535,
Mesci_1536
View Structure
6
3097384-3097497
(+)
TPP
3097520-3098096 (+)
Mesci_2983
YKOF domain-containing protein
Mesci_2983
Single gene
DOOR ID:
3028482
Mesci_2983
View Structure
7
3428537-3428741
(-)
cobalamin
3428069-3428498 (-)
Mesci_3282
Mesci_3282
Operon
DOOR ID:
792601
Mesci_3276,
Mesci_3277,
Mesci_3278,
Mesci_3279,
Mesci_3280,
Mesci_3281,
Mesci_3282
View Structure
8
3461477-3461673
(+)
cobalamin
3461708-3461888 (+)
Mesci_3313
Cobalt transporter; subunit CbtB
Mesci_3313
Operon
DOOR ID:
792608
Mesci_3313,
Mesci_3314,
Mesci_3315,
Mesci_3316
View Structure
9
4320563-4320649
(+)
glycine
4320798-4321899 (+)
Mesci_4178
Glycine cleavage system T protein
Mesci_4178
Operon
DOOR ID:
792782
Mesci_4178,
Mesci_4179,
Mesci_4180
View Structure
10
4752745-4752952
(-)
cobalamin
4751791-4752580 (-)
Mesci_4613
ABC transporter related protein
Mesci_4613
Operon
DOOR ID:
792865
Mesci_4611,
Mesci_4612,
Mesci_4613
View Structure
11
5191037-5191217
(+)
cobalamin
5191315-5192215 (+)
Mesci_5041
Cob(II)yrinic acid a;c-diamide reductase
Mesci_5041
Single gene
DOOR ID:
3029340
Mesci_5041
View Structure
12
5216507-5216574
(-)
SAH
5214510-5215941 (-)
Mesci_5065
FAD linked oxidase domain protein
Mesci_5065
Operon
DOOR ID:
792957
Mesci_5065,
Mesci_5066
View Structure
13
5334255-5334469
(+)
FMN
5334546-5335020 (+)
Mesci_5177
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Mesci_5177
Single gene
DOOR ID:
3029397
Mesci_5177
View Structure
14
6114653-6114746
(-)
glycine
6112986-6113430 (+)
Mesci_5905
GCN5-related N-acetyltransferase
Mesci_5905
Single gene
DOOR ID:
3029610
Mesci_5905
View Structure
15
6198441-6198518
(+)
sam-alpha
6198575-6199763 (+)
Mesci_5982
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Mesci_5982
Single gene
DOOR ID:
3029639
Mesci_5982
View Structure
Genome:
Mesorhizobium ciceri biovar biserrulae WSM1271
(
NC_014923.1
);
Phylum:
Alphaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"440546-440748";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"440862-442110";i:10;s:1:"+";i:11;s:10:"Mesci_0398";i:12;s:34:"Rieske (2Fe-2S) iron-sulfur domain";i:13;s:10:"Mesci_0398";i:14;s:6:"Operon";i:15;s:6:"792054";i:16;s:21:"Mesci_0398;Mesci_0399";i:17;s:39:"cellular metabolic process [GO:0044237]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"636790-636837";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"636407-636722";i:10;s:1:"-";i:11;s:10:"Mesci_0595";i:12;s:0:"";i:13;s:10:"Mesci_0595";i:14;s:11:"Single gene";i:15;s:7:"3027453";i:16;s:10:"Mesci_0595";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"680991-681060";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"682119-682878";i:10;s:1:"+";i:11;s:10:"Mesci_0645";i:12;s:39:"Short-chain dehydrogenase/reductase SDR";i:13;s:10:"Mesci_0645";i:14;s:11:"Single gene";i:15;s:7:"3027476";i:16;s:10:"Mesci_0645";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1369056-1369170";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1369213-1370212";i:10;s:1:"+";i:11;s:10:"Mesci_1313";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:10:"Mesci_1313";i:14;s:6:"Operon";i:15;s:6:"792240";i:16;s:32:"Mesci_1313;Mesci_1314;Mesci_1315";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1594822-1594899";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1593537-1594707";i:10;s:1:"-";i:11;s:10:"Mesci_1536";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Mesci_1536";i:14;s:6:"Operon";i:15;s:6:"792281";i:16;s:21:"Mesci_1535;Mesci_1536";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3097384-3097497";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3097520-3098096";i:10;s:1:"+";i:11;s:10:"Mesci_2983";i:12;s:30:"YKOF domain-containing protein";i:13;s:10:"Mesci_2983";i:14;s:11:"Single gene";i:15;s:7:"3028482";i:16;s:10:"Mesci_2983";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3428537-3428741";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3428069-3428498";i:10;s:1:"-";i:11;s:10:"Mesci_3282";i:12;s:0:"";i:13;s:10:"Mesci_3282";i:14;s:6:"Operon";i:15;s:6:"792601";i:16;s:76:"Mesci_3276;Mesci_3277;Mesci_3278;Mesci_3279;Mesci_3280;Mesci_3281;Mesci_3282";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3461477-3461673";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3461708-3461888";i:10;s:1:"+";i:11;s:10:"Mesci_3313";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:10:"Mesci_3313";i:14;s:6:"Operon";i:15;s:6:"792608";i:16;s:43:"Mesci_3313;Mesci_3314;Mesci_3315;Mesci_3316";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4320563-4320649";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4320798-4321899";i:10;s:1:"+";i:11;s:10:"Mesci_4178";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Mesci_4178";i:14;s:6:"Operon";i:15;s:6:"792782";i:16;s:32:"Mesci_4178;Mesci_4179;Mesci_4180";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4752745-4752952";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4751791-4752580";i:10;s:1:"-";i:11;s:10:"Mesci_4613";i:12;s:31:"ABC transporter related protein";i:13;s:10:"Mesci_4613";i:14;s:6:"Operon";i:15;s:6:"792865";i:16;s:32:"Mesci_4611;Mesci_4612;Mesci_4613";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5191037-5191217";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5191315-5192215";i:10;s:1:"+";i:11;s:10:"Mesci_5041";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:10:"Mesci_5041";i:14;s:11:"Single gene";i:15;s:7:"3029340";i:16;s:10:"Mesci_5041";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5216507-5216574";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"5214510-5215941";i:10;s:1:"-";i:11;s:10:"Mesci_5065";i:12;s:33:"FAD linked oxidase domain protein";i:13;s:10:"Mesci_5065";i:14;s:6:"Operon";i:15;s:6:"792957";i:16;s:21:"Mesci_5065;Mesci_5066";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5334255-5334469";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5334546-5335020";i:10;s:1:"+";i:11;s:10:"Mesci_5177";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"Mesci_5177";i:14;s:11:"Single gene";i:15;s:7:"3029397";i:16;s:10:"Mesci_5177";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6114653-6114746";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"6112986-6113430";i:10;s:1:"+";i:11;s:10:"Mesci_5905";i:12;s:32:"GCN5-related N-acetyltransferase";i:13;s:10:"Mesci_5905";i:14;s:11:"Single gene";i:15;s:7:"3029610";i:16;s:10:"Mesci_5905";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014923.1";i:2;s:47:"Mesorhizobium ciceri biovar biserrulae WSM1271 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6198441-6198518";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"6198575-6199763";i:10;s:1:"+";i:11;s:10:"Mesci_5982";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:10:"Mesci_5982";i:14;s:11:"Single gene";i:15;s:7:"3029639";i:16;s:10:"Mesci_5982";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}}