Genome: Rhodopseudomonas palustris DX-1 (NC_014834.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 33999-34081 (-)ZMP-ZTP32380-33973 (-)Rpdx1_0029

Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]		Rpdx1_0029Single gene

DOOR ID: 3016315		Rpdx1_0029 View Structure
2 279527-279724 (-)cobalamin277138-279418 (-)Rpdx1_0245

TonB-dependent siderophore receptor		Rpdx1_0245Operon

DOOR ID: 785495		Rpdx1_0244,
Rpdx1_0245		 View Structure
3 810761-810959 (+)cobalamin811066-811498 (+)Rpdx1_0765

Rpdx1_0765Operon

DOOR ID: 785603		Rpdx1_0765,
Rpdx1_0766,
Rpdx1_0767		 View Structure
4 824892-825107 (-)cobalamin823760-824819 (-)Rpdx1_0776

Nickel/cobalt efflux system		Rpdx1_0776Operon

DOOR ID: 785606		Rpdx1_0774,
Rpdx1_0775,
Rpdx1_0776		 View Structure
5 989334-989395 (+)fluoride989470-989851 (+)Rpdx1_0930

Putative fluoride ion transporter CrcB		Rpdx1_0930Single gene

DOOR ID: 3016694		Rpdx1_0930 View Structure
6 1207817-1207865 (-)mini-ykkC1206953-1207793 (-)Rpdx1_1129

Rpdx1_1129Operon

DOOR ID: 785669		Rpdx1_1128,
Rpdx1_1129,
Rpdx1_1130,
Rpdx1_1131,
Rpdx1_1132		 View Structure
7 1210620-1210724 (-)ykkC-yxkD1209473-1210544 (-)Rpdx1_1132

ABC transporter periplasmic binding protein; urea carboxylase region		Rpdx1_1132Operon

DOOR ID: 785669		Rpdx1_1128,
Rpdx1_1129,
Rpdx1_1130,
Rpdx1_1131,
Rpdx1_1132		 View Structure
8 1227403-1227603 (+)cobalamin1227793-1228129 (+)Rpdx1_1146

Rpdx1_1146Single gene

DOOR ID: 3016805		Rpdx1_1146 View Structure
9 1594436-1594541 (-)glycine1593154-1594303 (-)Rpdx1_1501

Glycine cleavage system T protein		Rpdx1_1501Operon

DOOR ID: 785740		Rpdx1_1500,
Rpdx1_1501		 View Structure
10 1896810-1896948 (-)TPP1895512-1895710 (-)Rpdx1_1781

Thiamine biosynthesis protein ThiS		Rpdx1_1781Operon

DOOR ID: 785791		Rpdx1_1781,
Rpdx1_1782		 View Structure
11 2807361-2807460 (-)SAH2807033-2807360 (+)Rpdx1_2623

NIPSNAP family containing protein		Rpdx1_2623Single gene

DOOR ID: 3017443		Rpdx1_2623 View Structure
12 3052524-3052584 (-)fluoride3051646-3052021 (-)Rpdx1_2861

Rpdx1_2861Single gene

DOOR ID: 3017550		Rpdx1_2861 View Structure
13 3323407-3323611 (+)cobalamin3323721-3325743 (+)Rpdx1_3118

Anaerobic ribonucleoside-triphosphate reductase		Rpdx1_3118Operon

DOOR ID: 786040		Rpdx1_3118,
Rpdx1_3119,
Rpdx1_3120		 View Structure
14 3450386-3450431 (+)mini-ykkC3450518-3450833 (+)Rpdx1_3230

Rpdx1_3230Single gene

DOOR ID: 3017674		Rpdx1_3230 View Structure
15 3657058-3657267 (-)cobalamin3655789-3656854 (-)Rpdx1_3420

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Rpdx1_3420Operon

DOOR ID: 786090		Rpdx1_3417,
Rpdx1_3418,
Rpdx1_3419,
Rpdx1_3420		 View Structure
16 3659929-3660132 (+)cobalamin3660241-3660805 (+)Rpdx1_3423

Rpdx1_3423Operon

DOOR ID: 786092		Rpdx1_3423,
Rpdx1_3424,
Rpdx1_3425,
Rpdx1_3426		 View Structure
17 3669174-3669377 (-)cobalamin3668185-3669142 (-)Rpdx1_3433

Periplasmic binding protein		Rpdx1_3433Single gene

DOOR ID: 3017774		Rpdx1_3433 View Structure
18 4364832-4364895 (-)SAH4364183-4364453 (-)Rpdx1_4066

Rpdx1_4066Operon

DOOR ID: 786216		Rpdx1_4066,
Rpdx1_4067		 View Structure
19 5008192-5008271 (-)sam-alpha5006885-5008085 (-)Rpdx1_4655

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Rpdx1_4655Operon

DOOR ID: 786315		Rpdx1_4654,
Rpdx1_4655		 View Structure
20 5321344-5321423 (+)sam-alpha5321497-5322709 (+)Rpdx1_4949

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) 		Rpdx1_4949Single gene

DOOR ID: 3018486		Rpdx1_4949 View Structure
21 5370144-5370349 (+)cobalamin5370456-5372568 (+)Rpdx1_4992

TonB-dependent receptor plug		Rpdx1_4992Single gene

DOOR ID: 3018498		Rpdx1_4992 View Structure