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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
727226-727343
(-)
SAH
725334-726990 (+)
Intca_0667
ResB family protein
Intca_0667
Operon
DOOR ID:
783614
Intca_0662,
Intca_0663,
Intca_0664,
Intca_0665,
Intca_0666,
Intca_0667,
Intca_0668,
Intca_0669
View Structure
2
825714-825879
(+)
ydaO-yuaA
826809-827493 (+)
Intca_0758
DSBA oxidoreductase
Intca_0758
Single gene
DOOR ID:
3013494
Intca_0758
View Structure
3
867993-868067
(+)
cobalamin
868125-871791 (+)
Intca_0798
Cobaltochelatase CobN subunit
Intca_0798
Single gene
DOOR ID:
3013509
Intca_0798
View Structure
4
881392-881464
(-)
cobalamin
879145-881317 (-)
Intca_0805
Protoporphyrin IX magnesium-chelatase
Intca_0805
Operon
DOOR ID:
783635
Intca_0802,
Intca_0803,
Intca_0804,
Intca_0805
View Structure
5
883553-883678
(+)
cobalamin
883702-884389 (+)
Intca_0808
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Intca_0808
Operon
DOOR ID:
783637
Intca_0808,
Intca_0809,
Intca_0810,
Intca_0811
View Structure
6
1176691-1176768
(+)
ZMP-ZTP
1176799-1178395 (+)
Intca_1067
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Intca_1067
Single gene
DOOR ID:
3013598
Intca_1067
View Structure
7
1420824-1420939
(-)
SAM-IV
1419486-1420809 (-)
Intca_1270
O-acetylhomoserine sulfhydrolase (9)
Intca_1270
Operon
DOOR ID:
783739
Intca_1269,
Intca_1270
View Structure
8
1567825-1567936
(-)
TPP
1565889-1567119 (-)
Intca_1403
Glycine oxidase ThiO
Intca_1403
Operon
DOOR ID:
783777
Intca_1398,
Intca_1399,
Intca_1400,
Intca_1401,
Intca_1402,
Intca_1403,
Intca_1404
View Structure
9
1687460-1687573
(+)
SAM-IV
1687592-1688792 (+)
Intca_1503
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Intca_1503
Single gene
DOOR ID:
3013724
Intca_1503
View Structure
10
1833014-1833154
(+)
FMN
1833273-1834035 (+)
Intca_1620
Nicotinamide mononucleotide transporter PnuC
Intca_1620
Operon
DOOR ID:
783819
Intca_1620,
Intca_1621,
Intca_1622,
Intca_1623,
Intca_1624
View Structure
11
1915672-1915753
(+)
SAH
1915942-1917178 (-)
Intca_1690
Glucose-6-phosphate dehydrogenase subunit
Intca_1690
Operon
DOOR ID:
783835
Intca_1689,
Intca_1690,
Intca_1691,
Intca_1692,
Intca_1693,
Intca_1694
View Structure
12
2048160-2048274
(-)
glycine
2045168-2048078 (-)
Intca_1815
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Intca_1815
Operon
DOOR ID:
783863
Intca_1814,
Intca_1815
View Structure
13
2250714-2250855
(+)
cobalamin
2250937-2251678 (+)
Intca_2007
Intca_2007
Operon
DOOR ID:
783913
Intca_2007,
Intca_2008,
Intca_2009,
Intca_2010,
Intca_2011,
Intca_2012
View Structure
14
2435003-2435129
(+)
SAM-IV
2435164-2436598 (+)
Intca_2180
Cysteine desulfurase
Intca_2180
Single gene
DOOR ID:
3013900
Intca_2180
View Structure
15
3224697-3224877
(-)
ydaO-yuaA
3224010-3224691 (-)
Intca_2906
Transglycosylase-like domain protein
Intca_2906
Single gene
DOOR ID:
3014126
Intca_2906
View Structure
16
3680651-3680767
(-)
TPP
3679893-3680529 (-)
Intca_3327
ABC-type thiamin-related transport system; permease component 1; predicted
Intca_3327
Operon
DOOR ID:
784219
Intca_3323,
Intca_3324,
Intca_3325,
Intca_3326,
Intca_3327
View Structure
17
3929829-3930034
(+)
ydaO-yuaA
3930036-3930912 (+)
Intca_3567
CHAP domain containing protein
Intca_3567
Single gene
DOOR ID:
3014333
Intca_3567
View Structure
18
3963353-3963449
(-)
glycine
3960266-3963206 (-)
Intca_3595
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Intca_3595
Operon
DOOR ID:
784275
Intca_3590,
Intca_3591,
Intca_3592,
Intca_3593,
Intca_3594,
Intca_3595
View Structure
19
3963626-3963730
(+)
glycine
3963860-3965378 (+)
Intca_3596
D-serine/D-alanine/glycine:proton symporter; AAT family
Intca_3596
Single gene
DOOR ID:
3014350
Intca_3596
View Structure
Genome:
Intrasporangium calvum DSM 43043
(
NC_014830.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"727226-727343";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"725334-726990";i:10;s:1:"+";i:11;s:10:"Intca_0667";i:12;s:19:"ResB family protein";i:13;s:10:"Intca_0667";i:14;s:6:"Operon";i:15;s:6:"783614";i:16;s:87:"Intca_0662;Intca_0663;Intca_0664;Intca_0665;Intca_0666;Intca_0667;Intca_0668;Intca_0669";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"825714-825879";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"826809-827493";i:10;s:1:"+";i:11;s:10:"Intca_0758";i:12;s:19:"DSBA oxidoreductase";i:13;s:10:"Intca_0758";i:14;s:11:"Single gene";i:15;s:7:"3013494";i:16;s:10:"Intca_0758";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"867993-868067";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"868125-871791";i:10;s:1:"+";i:11;s:10:"Intca_0798";i:12;s:30:"Cobaltochelatase CobN subunit ";i:13;s:10:"Intca_0798";i:14;s:11:"Single gene";i:15;s:7:"3013509";i:16;s:10:"Intca_0798";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"881392-881464";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"879145-881317";i:10;s:1:"-";i:11;s:10:"Intca_0805";i:12;s:38:"Protoporphyrin IX magnesium-chelatase ";i:13;s:10:"Intca_0805";i:14;s:6:"Operon";i:15;s:6:"783635";i:16;s:43:"Intca_0802;Intca_0803;Intca_0804;Intca_0805";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"883553-883678";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"883702-884389";i:10;s:1:"+";i:11;s:10:"Intca_0808";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:10:"Intca_0808";i:14;s:6:"Operon";i:15;s:6:"783637";i:16;s:43:"Intca_0808;Intca_0809;Intca_0810;Intca_0811";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1176691-1176768";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1176799-1178395";i:10;s:1:"+";i:11;s:10:"Intca_1067";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:10:"Intca_1067";i:14;s:11:"Single gene";i:15;s:7:"3013598";i:16;s:10:"Intca_1067";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1420824-1420939";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1419486-1420809";i:10;s:1:"-";i:11;s:10:"Intca_1270";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:10:"Intca_1270";i:14;s:6:"Operon";i:15;s:6:"783739";i:16;s:21:"Intca_1269;Intca_1270";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1567825-1567936";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1565889-1567119";i:10;s:1:"-";i:11;s:10:"Intca_1403";i:12;s:20:"Glycine oxidase ThiO";i:13;s:10:"Intca_1403";i:14;s:6:"Operon";i:15;s:6:"783777";i:16;s:76:"Intca_1398;Intca_1399;Intca_1400;Intca_1401;Intca_1402;Intca_1403;Intca_1404";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1687460-1687573";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1687592-1688792";i:10;s:1:"+";i:11;s:10:"Intca_1503";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Intca_1503";i:14;s:11:"Single gene";i:15;s:7:"3013724";i:16;s:10:"Intca_1503";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1833014-1833154";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1833273-1834035";i:10;s:1:"+";i:11;s:10:"Intca_1620";i:12;s:44:"Nicotinamide mononucleotide transporter PnuC";i:13;s:10:"Intca_1620";i:14;s:6:"Operon";i:15;s:6:"783819";i:16;s:54:"Intca_1620;Intca_1621;Intca_1622;Intca_1623;Intca_1624";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1915672-1915753";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1915942-1917178";i:10;s:1:"-";i:11;s:10:"Intca_1690";i:12;s:41:"Glucose-6-phosphate dehydrogenase subunit";i:13;s:10:"Intca_1690";i:14;s:6:"Operon";i:15;s:6:"783835";i:16;s:65:"Intca_1689;Intca_1690;Intca_1691;Intca_1692;Intca_1693;Intca_1694";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2048160-2048274";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2045168-2048078";i:10;s:1:"-";i:11;s:10:"Intca_1815";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Intca_1815";i:14;s:6:"Operon";i:15;s:6:"783863";i:16;s:21:"Intca_1814;Intca_1815";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2250714-2250855";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2250937-2251678";i:10;s:1:"+";i:11;s:10:"Intca_2007";i:12;s:0:"";i:13;s:10:"Intca_2007";i:14;s:6:"Operon";i:15;s:6:"783913";i:16;s:65:"Intca_2007;Intca_2008;Intca_2009;Intca_2010;Intca_2011;Intca_2012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2435003-2435129";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2435164-2436598";i:10;s:1:"+";i:11;s:10:"Intca_2180";i:12;s:21:"Cysteine desulfurase ";i:13;s:10:"Intca_2180";i:14;s:11:"Single gene";i:15;s:7:"3013900";i:16;s:10:"Intca_2180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3224697-3224877";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3224010-3224691";i:10;s:1:"-";i:11;s:10:"Intca_2906";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:10:"Intca_2906";i:14;s:11:"Single gene";i:15;s:7:"3014126";i:16;s:10:"Intca_2906";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3680651-3680767";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3679893-3680529";i:10;s:1:"-";i:11;s:10:"Intca_3327";i:12;s:74:"ABC-type thiamin-related transport system; permease component 1; predicted";i:13;s:10:"Intca_3327";i:14;s:6:"Operon";i:15;s:6:"784219";i:16;s:54:"Intca_3323;Intca_3324;Intca_3325;Intca_3326;Intca_3327";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3929829-3930034";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3930036-3930912";i:10;s:1:"+";i:11;s:10:"Intca_3567";i:12;s:30:"CHAP domain containing protein";i:13;s:10:"Intca_3567";i:14;s:11:"Single gene";i:15;s:7:"3014333";i:16;s:10:"Intca_3567";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3963353-3963449";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3960266-3963206";i:10;s:1:"-";i:11;s:10:"Intca_3595";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Intca_3595";i:14;s:6:"Operon";i:15;s:6:"784275";i:16;s:65:"Intca_3590;Intca_3591;Intca_3592;Intca_3593;Intca_3594;Intca_3595";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_014830.1";i:2;s:33:"Intrasporangium calvum DSM 43043 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3963626-3963730";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3963860-3965378";i:10;s:1:"+";i:11;s:10:"Intca_3596";i:12;s:55:"D-serine/D-alanine/glycine:proton symporter; AAT family";i:13;s:10:"Intca_3596";i:14;s:11:"Single gene";i:15;s:7:"3014350";i:16;s:10:"Intca_3596";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}}