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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
100087-100221
(+)
ydaO-yuaA
100234-101266 (+)
ML5_0095
ML5_0095
Single gene
DOOR ID:
3005603
ML5_0095
View Structure
2
339514-339607
(+)
cobalamin
339714-340647 (+)
ML5_0338
ML5_0338
Operon
DOOR ID:
779456
ML5_0338,
ML5_0339,
ML5_0340
View Structure
3
603364-603475
(-)
TPP
601618-602689 (-)
ML5_0579
ML5_0579
Operon
DOOR ID:
779505
ML5_0575,
ML5_0576,
ML5_0577,
ML5_0578,
ML5_0579,
ML5_0580
View Structure
4
776333-776464
(-)
ydaO-yuaA
775300-776329 (-)
ML5_0766
ML5_0766
Single gene
DOOR ID:
3005858
ML5_0766
View Structure
5
1808021-1808086
(-)
ykkC-III
1807646-1807961 (-)
ML5_1762
ML5_1762
operon
DOOR ID:
779770
ML5_1761,
ML5_1762
View Structure
6
2254833-2254975
(+)
ydaO-yuaA
2255179-2256022 (+)
ML5_2185
ML5_2185
Single gene
DOOR ID:
3006359
ML5_2185
View Structure
7
2566185-2566357
(+)
FMN
2566527-2567589 (+)
ML5_2468
ML5_2468
Operon
DOOR ID:
779927
ML5_2468,
ML5_2469,
ML5_2470,
ML5_2471,
ML5_2472,
ML5_2473,
ML5_2474,
ML5_2475,
ML5_2476
View Structure
8
2869440-2869572
(+)
SAM
2869584-2870874 (+)
ML5_2739
ML5_2739
Single gene
DOOR ID:
3006565
ML5_2739
View Structure
9
2889711-2889833
(-)
SAM-IV
2888402-2889665 (-)
ML5_2755
ML5_2755
Single gene
DOOR ID:
3006573
ML5_2755
View Structure
10
3647501-3647607
(-)
TPP
3646834-3647425 (-)
ML5_3468
ML5_3468
Single gene
DOOR ID:
3006857
ML5_3468
View Structure
11
3754593-3754723
(-)
ydaO-yuaA
3753514-3754588 (-)
ML5_3573
ML5_3573
Single gene
DOOR ID:
3006895
ML5_3573
View Structure
12
4567586-4567770
(+)
cobalamin
4567811-4568795 (+)
ML5_4297
ML5_4297
Operon
DOOR ID:
780309
ML5_4297,
ML5_4298,
ML5_4299
View Structure
13
4573395-4573535
(-)
AdoCbl
4572292-4573075 (-)
ML5_4302
ML5_4302
Single gene
DOOR ID:
3007164
ML5_4302
View Structure
14
4573450-4573511
(-)
cobalamin
4573186-4573396 (-)
ML5_4303
ML5_4303
Single gene
DOOR ID:
3007165
ML5_4303
View Structure
15
4578569-4578713
(-)
cobalamin
4576539-4578522 (-)
ML5_4307
ML5_4307
Operon
DOOR ID:
780311
ML5_4304,
ML5_4305,
ML5_4306,
ML5_4307
View Structure
16
4583814-4583995
(+)
cobalamin
4584084-4584729 (+)
ML5_4313
ML5_4313
Operon
DOOR ID:
780314
ML5_4313,
ML5_4314,
ML5_4315
View Structure
17
4615593-4615811
(+)
cobalamin
4615927-4616641 (+)
ML5_4340
ML5_4340
Single gene
DOOR ID:
3007171
ML5_4340
View Structure
18
4642814-4642903
(+)
glycine
4643041-4644169 (+)
ML5_4366
ML5_4366
Operon
DOOR ID:
780321
ML5_4366,
ML5_4367,
ML5_4368,
ML5_4369
View Structure
19
4773686-4773822
(+)
cobalamin
4773920-4774964 (+)
ML5_4482
ML5_4482
Operon
DOOR ID:
780342
ML5_4482,
ML5_4483
View Structure
20
4775617-4775690
(+)
cobalamin
4775848-4777303 (+)
ML5_4484
ML5_4484
Operon
DOOR ID:
780343
ML5_4484,
ML5_4485,
ML5_4486,
ML5_4487,
ML5_4488
View Structure
21
5196689-5196799
(-)
SAM-IV
5196529-5196655 (-)
ML5_4796
ML5_4796
Operon
DOOR ID:
780413
ML5_4793,
ML5_4794,
ML5_4795,
ML5_4796
View Structure
22
5333667-5333756
(-)
ZMP-ZTP
5332211-5333648 (-)
ML5_4926
ML5_4926
Single gene
DOOR ID:
3007321
ML5_4926
View Structure
23
5458824-5458995
(+)
ydaO-yuaA
5459842-5460292 (+)
ML5_5040
ML5_5040
Single gene
DOOR ID:
3007369
ML5_5040
View Structure
24
5602958-5603048
(+)
glycine
5603121-5605944 (+)
ML5_5185
ML5_5185
Single gene
DOOR ID:
3007424
ML5_5185
View Structure
25
5612636-5612717
(-)
ZMP-ZTP
5611755-5612622 (-)
ML5_5193
ML5_5193
Single gene
DOOR ID:
3007430
ML5_5193
View Structure
26
6225583-6225790
(+)
cobalamin
6225920-6226433 (+)
ML5_5765
ML5_5765
Operon
DOOR ID:
780606
ML5_5765,
ML5_5766
View Structure
27
6228114-6228330
(+)
cobalamin
6228444-6230841 (+)
ML5_5768
ML5_5768
Operon
DOOR ID:
780607
ML5_5768,
ML5_5769
View Structure
Genome:
Micromonospora sp. L5
(
NC_014815.1
);
Phylum:
Actinobacteria
a:28:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"100087-100221";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"100234-101266";i:10;s:1:"+";i:11;s:8:"ML5_0095";i:12;s:0:"";i:13;s:8:"ML5_0095";i:14;s:11:"Single gene";i:15;s:7:"3005603";i:16;s:8:"ML5_0095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"339514-339607";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"339714-340647";i:10;s:1:"+";i:11;s:8:"ML5_0338";i:12;s:0:"";i:13;s:8:"ML5_0338";i:14;s:6:"Operon";i:15;s:6:"779456";i:16;s:26:"ML5_0338;ML5_0339;ML5_0340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"603364-603475";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"601618-602689";i:10;s:1:"-";i:11;s:8:"ML5_0579";i:12;s:0:"";i:13;s:8:"ML5_0579";i:14;s:6:"Operon";i:15;s:6:"779505";i:16;s:53:"ML5_0575;ML5_0576;ML5_0577;ML5_0578;ML5_0579;ML5_0580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"776333-776464";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"775300-776329";i:10;s:1:"-";i:11;s:8:"ML5_0766";i:12;s:0:"";i:13;s:8:"ML5_0766";i:14;s:11:"Single gene";i:15;s:7:"3005858";i:16;s:8:"ML5_0766";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1808021-1808086";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1807646-1807961";i:10;s:1:"-";i:11;s:8:"ML5_1762";i:12;s:0:"";i:13;s:8:"ML5_1762";i:14;s:6:"operon";i:15;s:6:"779770";i:16;s:17:"ML5_1761;ML5_1762";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2254833-2254975";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2255179-2256022";i:10;s:1:"+";i:11;s:8:"ML5_2185";i:12;s:0:"";i:13;s:8:"ML5_2185";i:14;s:11:"Single gene";i:15;s:7:"3006359";i:16;s:8:"ML5_2185";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2566185-2566357";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2566527-2567589";i:10;s:1:"+";i:11;s:8:"ML5_2468";i:12;s:0:"";i:13;s:8:"ML5_2468";i:14;s:6:"Operon";i:15;s:6:"779927";i:16;s:80:"ML5_2468;ML5_2469;ML5_2470;ML5_2471;ML5_2472;ML5_2473;ML5_2474;ML5_2475;ML5_2476";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2869440-2869572";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2869584-2870874";i:10;s:1:"+";i:11;s:8:"ML5_2739";i:12;s:0:"";i:13;s:8:"ML5_2739";i:14;s:11:"Single gene";i:15;s:7:"3006565";i:16;s:8:"ML5_2739";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2889711-2889833";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2888402-2889665";i:10;s:1:"-";i:11;s:8:"ML5_2755";i:12;s:0:"";i:13;s:8:"ML5_2755";i:14;s:11:"Single gene";i:15;s:7:"3006573";i:16;s:8:"ML5_2755";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3647501-3647607";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3646834-3647425";i:10;s:1:"-";i:11;s:8:"ML5_3468";i:12;s:0:"";i:13;s:8:"ML5_3468";i:14;s:11:"Single gene";i:15;s:7:"3006857";i:16;s:8:"ML5_3468";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3754593-3754723";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3753514-3754588";i:10;s:1:"-";i:11;s:8:"ML5_3573";i:12;s:0:"";i:13;s:8:"ML5_3573";i:14;s:11:"Single gene";i:15;s:7:"3006895";i:16;s:8:"ML5_3573";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4567586-4567770";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4567811-4568795";i:10;s:1:"+";i:11;s:8:"ML5_4297";i:12;s:0:"";i:13;s:8:"ML5_4297";i:14;s:6:"Operon";i:15;s:6:"780309";i:16;s:26:"ML5_4297;ML5_4298;ML5_4299";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4573395-4573535";i:6;s:1:"-";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:15:"4572292-4573075";i:10;s:1:"-";i:11;s:8:"ML5_4302";i:12;s:0:"";i:13;s:8:"ML5_4302";i:14;s:11:"Single gene";i:15;s:7:"3007164";i:16;s:8:"ML5_4302";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4573450-4573511";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4573186-4573396";i:10;s:1:"-";i:11;s:8:"ML5_4303";i:12;s:0:"";i:13;s:8:"ML5_4303";i:14;s:11:"Single gene";i:15;s:7:"3007165";i:16;s:8:"ML5_4303";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4578569-4578713";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4576539-4578522";i:10;s:1:"-";i:11;s:8:"ML5_4307";i:12;s:0:"";i:13;s:8:"ML5_4307";i:14;s:6:"Operon";i:15;s:6:"780311";i:16;s:35:"ML5_4304;ML5_4305;ML5_4306;ML5_4307";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4583814-4583995";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4584084-4584729";i:10;s:1:"+";i:11;s:8:"ML5_4313";i:12;s:0:"";i:13;s:8:"ML5_4313";i:14;s:6:"Operon";i:15;s:6:"780314";i:16;s:26:"ML5_4313;ML5_4314;ML5_4315";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. L5 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4615593-4615811";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4615927-4616641";i:10;s:1:"+";i:11;s:8:"ML5_4340";i:12;s:0:"";i:13;s:8:"ML5_4340";i:14;s:11:"Single gene";i:15;s:7:"3007171";i:16;s:8:"ML5_4340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014815.1";i:2;s:22:"Micromonospora sp. 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