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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
209132-209311
(-)
lysine
208119-209004 (-)
dapA
PSM_A0197
Operon
DOOR ID:
777977
PSM_A0194,
PSM_A0195
(dcdA)
,
PSM_A0196
(dapD)
,
PSM_A0197
(dapA)
View Structure
2
404869-404975
(+)
TPP
405117-407070 (+)
thiC
PSM_A0370
Operon
DOOR ID:
778016
PSM_A0370
(thiC)
,
PSM_A0371
(thiO)
,
PSM_A0372,
PSM_A0373
(thiG)
,
PSM_A0374
(thiDE)
,
PSM_A0375
View Structure
3
868472-868637
(+)
cobalamin
868673-870524 (+)
PSM_A0810
PSM_A0810
Single gene
DOOR ID:
3001887
PSM_A0810
View Structure
4
971601-971683
(+)
c-di-GMP-I
971778-972651 (+)
PSM_A0914
PSM_A0914
single gene
DOOR ID:
3001915
PSM_A0914
View Structure
5
1891018-1891190
(-)
lysine
1888815-1889574 (+)
PSM_A1764
PSM_A1764
Single gene
DOOR ID:
3002293
PSM_A1764
View Structure
Genome:
Pseudoalteromonas sp. SM9913 chromosome I
(
NC_014803.1
);
Phylum:
Gammaproteobacteria
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