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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
59624-59701
(+)
sam-alpha
59769-60135 (+)
Ocepr_0067
Ocepr_0067
Single gene
DOOR ID:
2999216
Ocepr_0067
View Structure
2
164383-164467
(+)
c-di-GMP-II
164491-165142 (+)
Ocepr_0168
Ocepr_0168
Operon
DOOR ID:
776001
Ocepr_0168,
Ocepr_0169,
Ocepr_0170,
Ocepr_0171
View Structure
3
232069-232155
(-)
c-di-GMP-II
231569-231995 (-)
Ocepr_0240
Ocepr_0240
Single gene
DOOR ID:
2999255
Ocepr_0240
View Structure
4
232367-232455
(+)
c-di-GMP-II
232473-233145 (+)
Ocepr_0241
Ocepr_0241
Operon
DOOR ID:
776020
Ocepr_0241,
Ocepr_0242,
Ocepr_0243
View Structure
5
388489-388635
(+)
cobalamin
388762-389644 (+)
Ocepr_0393
Periplasmic binding protein
Ocepr_0393
Operon
DOOR ID:
776053
Ocepr_0393,
Ocepr_0394,
Ocepr_0395,
Ocepr_0396,
Ocepr_0397,
Ocepr_0398,
Ocepr_0399,
Ocepr_0400,
Ocepr_0401,
Ocepr_0402,
Ocepr_0403,
Ocepr_0404,
Ocepr_0405
View Structure
6
443236-443327
(+)
TPP
443364-444408 (+)
Ocepr_0440
ABC transporter; periplasmic binding protein; thiB subfamily
Ocepr_0440
Single gene
DOOR ID:
2999300
Ocepr_0440
View Structure
7
825578-825685
(+)
SAM
825762-827037 (+)
Ocepr_0820
O-acetylhomoserine sulfhydrolase (9)
Ocepr_0820
Operon
DOOR ID:
776142
Ocepr_0820,
Ocepr_0821
View Structure
8
1095103-1095204
(-)
SAM
1094194-1095061 (-)
Ocepr_1063
Methylenetetrahydrofolate reductase (0)
Ocepr_1063
Single gene
DOOR ID:
2999417
Ocepr_1063
View Structure
9
1734143-1734271
(-)
FMN
1732926-1734069 (-)
Ocepr_1719
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Ocepr_1719
Operon
DOOR ID:
776344
Ocepr_1717,
Ocepr_1718,
Ocepr_1719
View Structure
Genome:
Oceanithermus profundus DSM 14977
(
NC_014761.1
);
Phylum:
Deinococcus-Thermus
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