RiboswitchDB

Genome: Paludibacter propionicigenes WB4 (NC_014734.1); Phylum: Bacteroidetes/Chlorobi group

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

936814-937087 (+)

cobalamin

937205-939227 (+)

Palpr_0787

TonB-dependent receptor

Operon

DOOR ID: 773644

Palpr_0787,
Palpr_0788

2

1573974-1574068 (-)

TPP

1571448-1573917 (-)

Palpr_1306

TonB-dependent receptor plug

Single gene

DOOR ID: 2994537

Palpr_1306

3

1729328-1729640 (+)

cobalamin

1729759-1732123 (+)

Palpr_1458

TonB-dependent receptor

Single gene

DOOR ID: 2994599

Palpr_1458

4

3089459-3089662 (+)

cobalamin

3089825-3090203 (+)

Palpr_2559

Cobalamin (Vitamin B12) biosynthesis CbiX protein

Operon

DOOR ID: 774016

Palpr_2559,
Palpr_2560,
Palpr_2561,
Palpr_2562

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";}}