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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
8566-8630
(-)
fluoride
8107-8491 (-)
crcB
MPQ_0007
Operon
DOOR ID:
772913
MPQ_0005
(rio1)
,
MPQ_0006,
MPQ_0007
(crcB)
View Structure
2
110948-111032
(+)
c-di-GMP-I
111108-112386 (+)
tolA
MPQ_0102
single gene
DOOR ID:
2993106
MPQ_0102
(tolA)
View Structure
3
181798-182005
(-)
cobalamin
179816-181691 (-)
btuB
MPQ_0165
Single gene
DOOR ID:
2993124
MPQ_0165
(btuB)
View Structure
4
184938-185154
(-)
cobalamin
182871-184788 (-)
MPQ_0167
MPQ_0167
Single gene
DOOR ID:
2993126
MPQ_0167
View Structure
5
205965-206048
(+)
SAH
206137-207547 (+)
sam1
MPQ_0189
Single gene
DOOR ID:
2993138
MPQ_0189
(sam1)
View Structure
6
419803-419887
(-)
c-di-GMP-I
419527-419650 (-)
MPQ_0422
MPQ_0422
operon
DOOR ID:
773002
MPQ_0423
(rtn)
,
MPQ_0422
View Structure
7
988382-988426
(+)
mini-ykkC
988439-992066 (+)
MPQ_0992
MPQ_0992
Operon
DOOR ID:
773121
MPQ_0992,
MPQ_0993
(gatA)
,
MPQ_0994
View Structure
8
1152572-1152829
(+)
cobalamin
1152972-1155786 (+)
nrdA
MPQ_1143
Operon
DOOR ID:
773149
MPQ_1143
(nrdA)
,
MPQ_1144
(nrdF)
View Structure
9
1192002-1192046
(-)
mini-ykkC
1191673-1191988 (-)
MPQ_1176
MPQ_1176
Single gene
DOOR ID:
2993418
MPQ_1176
View Structure
10
2047150-2047346
(+)
cobalamin
2047461-2049558 (+)
MPQ_1980
MPQ_1980
Single gene
DOOR ID:
2993701
MPQ_1980
View Structure
11
2624206-2624317
(-)
TPP
2622254-2624138 (-)
thiC
MPQ_2555
Single gene
DOOR ID:
2993892
MPQ_2555
(thiC)
View Structure
Genome:
Methylovorus sp. MP688
(
NC_014733.1
);
Phylum:
Betaproteobacteria
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