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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
161586-161729
(-)
glycine
159927-160308 (-)
RBRH_00845
Glycine cleavage system H protein
RBRH_00845
Operon
DOOR ID:
770829
RBRH_00844,
RBRH_00845,
RBRH_00846
View Structure
2
161790-161893
(-)
glycine
160403-161645 (-)
RBRH_00846
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RBRH_00846
Operon
DOOR ID:
770829
RBRH_00844,
RBRH_00845,
RBRH_00846
View Structure
3
567342-567598
(+)
cobalamin
569700-570756 (+)
RBRH_03139
Transporter
RBRH_03139
Operon
DOOR ID:
770931
RBRH_03140,
RBRH_03139,
RBRH_03138
View Structure
4
1008989-1009126
(+)
TPP
1009239-1010409 (+)
RBRH_02308
Glycine oxidase (9)
RBRH_02308
Operon
DOOR ID:
771036
RBRH_02308,
RBRH_02307,
RBRH_02306,
RBRH_02305
View Structure
5
1514550-1514617
(+)
SAH
1515236-1515545 (+)
RBRH_01603
BolA protein
RBRH_01603
Operon
DOOR ID:
771161
RBRH_01598,
RBRH_01599,
RBRH_01600,
RBRH_01601,
RBRH_01602,
RBRH_01603,
RBRH_01604
View Structure
6
1964056-1964154
(-)
ZMP-ZTP
1962655-1963903 (-)
RBRH_01534
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
RBRH_01534
Operon
DOOR ID:
771244
RBRH_01535,
RBRH_01534
View Structure
7
2124630-2124676
(-)
mini-ykkC
2124288-2124609 (-)
RBRH_02496
RBRH_02496
Operon
DOOR ID:
771280
RBRH_02497,
RBRH_02496
View Structure
8
2373047-2373221
(+)
FMN
2373275-2374097 (+)
RBRH_02002
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
RBRH_02002
Single gene
DOOR ID:
2989609
RBRH_02002
View Structure
9
2668702-2668816
(-)
SAH
2667250-2668675 (-)
RBRH_02726
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
RBRH_02726
Operon
DOOR ID:
771436
RBRH_02728,
RBRH_02727,
RBRH_02726
View Structure
Genome:
Burkholderia rhizoxinica HKI 454
(
NC_014722.1
);
Phylum:
Betaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"161586-161729";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"159927-160308";i:10;s:1:"-";i:11;s:10:"RBRH_00845";i:12;s:33:"Glycine cleavage system H protein";i:13;s:10:"RBRH_00845";i:14;s:6:"Operon";i:15;s:6:"770829";i:16;s:32:"RBRH_00844;RBRH_00845;RBRH_00846";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"161790-161893";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"160403-161645";i:10;s:1:"-";i:11;s:10:"RBRH_00846";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"RBRH_00846";i:14;s:6:"Operon";i:15;s:6:"770829";i:16;s:32:"RBRH_00844;RBRH_00845;RBRH_00846";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"567342-567598";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"569700-570756";i:10;s:1:"+";i:11;s:10:"RBRH_03139";i:12;s:11:"Transporter";i:13;s:10:"RBRH_03139";i:14;s:6:"Operon";i:15;s:6:"770931";i:16;s:32:"RBRH_03140;RBRH_03139;RBRH_03138";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1008989-1009126";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1009239-1010409";i:10;s:1:"+";i:11;s:10:"RBRH_02308";i:12;s:19:"Glycine oxidase (9)";i:13;s:10:"RBRH_02308";i:14;s:6:"Operon";i:15;s:6:"771036";i:16;s:43:"RBRH_02308;RBRH_02307;RBRH_02306;RBRH_02305";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1514550-1514617";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1515236-1515545";i:10;s:1:"+";i:11;s:10:"RBRH_01603";i:12;s:12:"BolA protein";i:13;s:10:"RBRH_01603";i:14;s:6:"Operon";i:15;s:6:"771161";i:16;s:76:"RBRH_01598;RBRH_01599;RBRH_01600;RBRH_01601;RBRH_01602;RBRH_01603;RBRH_01604";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1964056-1964154";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1962655-1963903";i:10;s:1:"-";i:11;s:10:"RBRH_01534";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"RBRH_01534";i:14;s:6:"Operon";i:15;s:6:"771244";i:16;s:21:"RBRH_01535;RBRH_01534";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2124630-2124676";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2124288-2124609";i:10;s:1:"-";i:11;s:10:"RBRH_02496";i:12;s:0:"";i:13;s:10:"RBRH_02496";i:14;s:6:"Operon";i:15;s:6:"771280";i:16;s:21:"RBRH_02497;RBRH_02496";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2373047-2373221";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2373275-2374097";i:10;s:1:"+";i:11;s:10:"RBRH_02002";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"RBRH_02002";i:14;s:11:"Single gene";i:15;s:7:"2989609";i:16;s:10:"RBRH_02002";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014722.1";i:2;s:33:"Burkholderia rhizoxinica HKI 454 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2668702-2668816";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2667250-2668675";i:10;s:1:"-";i:11;s:10:"RBRH_02726";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"RBRH_02726";i:14;s:6:"Operon";i:15;s:6:"771436";i:16;s:32:"RBRH_02728;RBRH_02727;RBRH_02726";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}