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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
362429-362555
(+)
TPP
362680-362872 (+)
Calkr_0321
Thiamine biosynthesis protein ThiS
Calkr_0321
Operon
DOOR ID:
770352
Calkr_0321,
Calkr_0322,
Calkr_0323,
Calkr_0324,
Calkr_0325,
Calkr_0326,
Calkr_0327,
Calkr_0328
View Structure
2
663866-664022
(+)
ykoK
664345-665599 (+)
Calkr_0614
MgtE intracellular region
Calkr_0614
Operon
DOOR ID:
770413
Calkr_0614,
Calkr_0615
View Structure
3
872413-872575
(+)
ydaO-yuaA
872579-873539 (+)
Calkr_0808
NLP/P60 protein
Calkr_0808
Single gene
DOOR ID:
2988437
Calkr_0808
View Structure
4
897466-897555
(+)
c-di-GMP-I
897683-898103 (+)
Calkr_0830
Uncharacterized protein
Calkr_0830
operon
DOOR ID:
770456
Calkr_0829,
Calkr_0830
View Structure
5
1161883-1162004
(+)
SAM
1162115-1163393 (+)
Calkr_1105
O-acetylhomoserine/O-acetylserine sulfhydrylase
Calkr_1105
Single gene
DOOR ID:
2988497
Calkr_1105
View Structure
6
1177829-1178012
(-)
lysine
1176705-1177707 (-)
Calkr_1117
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Calkr_1117
Operon
DOOR ID:
770506
Calkr_1112,
Calkr_1113,
Calkr_1114,
Calkr_1115,
Calkr_1116,
Calkr_1117
View Structure
7
1568863-1568987
(-)
SAM
1567074-1568505 (+)
Calkr_1509
Calkr_1509
Single gene
DOOR ID:
2988564
Calkr_1509
View Structure
8
1947498-1947631
(-)
MOCO
1946575-1947394 (-)
Calkr_1887
Extracellular solute-binding protein family 1
Calkr_1887
Operon
DOOR ID:
770649
Calkr_1881,
Calkr_1882,
Calkr_1883,
Calkr_1884,
Calkr_1885,
Calkr_1886,
Calkr_1887
View Structure
9
2086903-2086966
(-)
fluoride
2086411-2086810 (-)
Calkr_2012
Putative fluoride ion transporter CrcB
Calkr_2012
Operon
DOOR ID:
770674
Calkr_2011,
Calkr_2012
View Structure
10
2102411-2102539
(+)
FMN
2102659-2103775 (+)
Calkr_2031
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Calkr_2031
Operon
DOOR ID:
770680
Calkr_2031,
Calkr_2032,
Calkr_2033,
Calkr_2034
View Structure
11
2233801-2234023
(+)
cobalamin
2234288-2236562 (+)
Calkr_2186
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
Calkr_2186
Single gene
DOOR ID:
2988723
Calkr_2186
View Structure
12
2300111-2300264
(+)
ydaO-yuaA
2300270-2301629 (+)
Calkr_2241
Pyruvate carboxyltransferase
Calkr_2241
Single gene
DOOR ID:
2988739
Calkr_2241
View Structure
13
2326064-2326137
(-)
fluoride
2323546-2325316 (-)
Calkr_2259
Dynamin family protein
Calkr_2259
Operon
DOOR ID:
770724
Calkr_2257,
Calkr_2258,
Calkr_2259,
Calkr_2260,
Calkr_2261,
Calkr_2262
View Structure
14
2356859-2357007
(-)
ydaO-yuaA
2355499-2356723 (-)
Calkr_2290
Lysine 2;3-aminomutase YodO family protein
Calkr_2290
Single gene
DOOR ID:
2988757
Calkr_2290
View Structure
15
2417904-2418073
(-)
glmS
2415994-2417830 (-)
Calkr_2351
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Calkr_2351
Single gene
DOOR ID:
2988778
Calkr_2351
View Structure
Genome:
Caldicellulosiruptor kristjanssonii I77R1B
(
NC_014721.1
);
Phylum:
Firmicutes
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diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1568863-1568987";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1567074-1568505";i:10;s:1:"+";i:11;s:10:"Calkr_1509";i:12;s:0:"";i:13;s:10:"Calkr_1509";i:14;s:11:"Single gene";i:15;s:7:"2988564";i:16;s:10:"Calkr_1509";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1947498-1947631";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1946575-1947394";i:10;s:1:"-";i:11;s:10:"Calkr_1887";i:12;s:45:"Extracellular solute-binding protein family 1";i:13;s:10:"Calkr_1887";i:14;s:6:"Operon";i:15;s:6:"770649";i:16;s:76:"Calkr_1881;Calkr_1882;Calkr_1883;Calkr_1884;Calkr_1885;Calkr_1886;Calkr_1887";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2086903-2086966";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2086411-2086810";i:10;s:1:"-";i:11;s:10:"Calkr_2012";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Calkr_2012";i:14;s:6:"Operon";i:15;s:6:"770674";i:16;s:21:"Calkr_2011;Calkr_2012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2102411-2102539";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2102659-2103775";i:10;s:1:"+";i:11;s:10:"Calkr_2031";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Calkr_2031";i:14;s:6:"Operon";i:15;s:6:"770680";i:16;s:43:"Calkr_2031;Calkr_2032;Calkr_2033;Calkr_2034";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2233801-2234023";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2234288-2236562";i:10;s:1:"+";i:11;s:10:"Calkr_2186";i:12;s:73:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)";i:13;s:10:"Calkr_2186";i:14;s:11:"Single gene";i:15;s:7:"2988723";i:16;s:10:"Calkr_2186";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2300111-2300264";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2300270-2301629";i:10;s:1:"+";i:11;s:10:"Calkr_2241";i:12;s:28:"Pyruvate carboxyltransferase";i:13;s:10:"Calkr_2241";i:14;s:11:"Single gene";i:15;s:7:"2988739";i:16;s:10:"Calkr_2241";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2326064-2326137";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2323546-2325316";i:10;s:1:"-";i:11;s:10:"Calkr_2259";i:12;s:22:"Dynamin family protein";i:13;s:10:"Calkr_2259";i:14;s:6:"Operon";i:15;s:6:"770724";i:16;s:65:"Calkr_2257;Calkr_2258;Calkr_2259;Calkr_2260;Calkr_2261;Calkr_2262";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2356859-2357007";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2355499-2356723";i:10;s:1:"-";i:11;s:10:"Calkr_2290";i:12;s:43:"Lysine 2;3-aminomutase YodO family protein ";i:13;s:10:"Calkr_2290";i:14;s:11:"Single gene";i:15;s:7:"2988757";i:16;s:10:"Calkr_2290";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014721.1";i:2;s:43:"Caldicellulosiruptor kristjanssonii I77R1B ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2417904-2418073";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2415994-2417830";i:10;s:1:"-";i:11;s:10:"Calkr_2351";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Calkr_2351";i:14;s:11:"Single gene";i:15;s:7:"2988778";i:16;s:10:"Calkr_2351";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}}