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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
328029-328225
(+)
glmS
328300-330136 (+)
Calkro_0231
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Calkro_0231
Single gene
DOOR ID:
2987707
Calkro_0231
View Structure
2
415474-415698
(-)
cobalamin
412944-415218 (-)
Calkro_0302
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Calkro_0302
Single gene
DOOR ID:
2987732
Calkro_0302
View Structure
3
474403-474550
(+)
ydaO-yuaA
474686-475910 (+)
Calkro_0356
Lysine 2;3-aminomutase YodO family protein
Calkro_0356
Single gene
DOOR ID:
2987756
Calkro_0356
View Structure
4
543623-543773
(-)
ydaO-yuaA
542257-543616 (-)
Calkro_0420
Pyruvate carboxyltransferase
Calkro_0420
Single gene
DOOR ID:
2987777
Calkro_0420
View Structure
5
699201-699368
(+)
ykoK
699732-702420 (+)
Calkro_0566
Magnesium-translocating P-type ATPase
Calkro_0566
Single gene
DOOR ID:
2987804
Calkro_0566
View Structure
6
968311-968472
(+)
ydaO-yuaA
968476-969436 (+)
Calkro_0823
NLP/P60 protein
Calkro_0823
Single gene
DOOR ID:
2987861
Calkro_0823
View Structure
7
989712-989801
(+)
c-di-GMP-I
989950-991900 (+)
Calkro_0845
Uncharacterized protein
Calkro_0845
single gene
DOOR ID:
2987864
Calkro_0845
View Structure
8
996348-996437
(+)
c-di-GMP-I
996998-1002188 (+)
Calkro_0850
Endoglucanase
Calkro_0850
single gene
DOOR ID:
2987866
Calkro_0850
View Structure
9
1045800-1045897
(+)
c-di-GMP-I
1046037-1046457 (+)
Calkro_0870
Uncharacterized protein
Calkro_0870
single gene
DOOR ID:
2987878
Calkro_0870
View Structure
10
1728690-1728873
(+)
lysine
1728994-1729996 (+)
Calkro_1562
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Calkro_1562
Operon
DOOR ID:
770074
Calkro_1562,
Calkro_1563,
Calkro_1564,
Calkro_1565
View Structure
11
1744691-1744811
(-)
SAM
1743301-1744579 (-)
Calkro_1573
O-acetylhomoserine/O-acetylserine sulfhydrylase
Calkro_1573
Operon
DOOR ID:
770076
Calkro_1570,
Calkro_1571,
Calkro_1572,
Calkro_1573
View Structure
12
1993842-1993974
(-)
MOCO
1992934-1993750 (-)
Calkro_1829
Extracellular solute-binding protein family 1
Calkro_1829
Operon
DOOR ID:
770120
Calkro_1823,
Calkro_1824,
Calkro_1825,
Calkro_1826,
Calkro_1827,
Calkro_1828,
Calkro_1829
View Structure
13
2128456-2128580
(-)
SAM
2127153-2128344 (-)
Calkro_1946
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Calkro_1946
Single gene
DOOR ID:
2988073
Calkro_1946
View Structure
14
2152418-2152574
(-)
ykoK
2150838-2152092 (-)
Calkro_1970
MgtE intracellular region
Calkro_1970
Operon
DOOR ID:
770153
Calkro_1969,
Calkro_1970
View Structure
15
2234824-2234887
(-)
fluoride
2234333-2234732 (-)
Calkro_2040
Putative fluoride ion transporter CrcB
Calkro_2040
Operon
DOOR ID:
770171
Calkro_2039,
Calkro_2040
View Structure
16
2260386-2260514
(+)
FMN
2260636-2261752 (+)
Calkro_2068
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Calkro_2068
Operon
DOOR ID:
770177
Calkro_2068,
Calkro_2069,
Calkro_2070,
Calkro_2071
View Structure
17
2469742-2469876
(-)
TPP
2469418-2469694 (-)
Calkro_2260
Thiamine biosynthesis protein ThiS
Calkro_2260
Operon
DOOR ID:
770217
Calkro_2253,
Calkro_2254,
Calkro_2255,
Calkro_2256,
Calkro_2257,
Calkro_2258,
Calkro_2259,
Calkro_2260
View Structure
Genome:
Caldicellulosiruptor kronotskyensis 2002
(
NC_014720.1
);
Phylum:
Firmicutes
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"328029-328225";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"328300-330136";i:10;s:1:"+";i:11;s:11:"Calkro_0231";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:11:"Calkro_0231";i:14;s:11:"Single gene";i:15;s:7:"2987707";i:16;s:11:"Calkro_0231";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"415474-415698";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"412944-415218";i:10;s:1:"-";i:11;s:11:"Calkro_0302";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:11:"Calkro_0302";i:14;s:11:"Single gene";i:15;s:7:"2987732";i:16;s:11:"Calkro_0302";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"474403-474550";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"474686-475910";i:10;s:1:"+";i:11;s:11:"Calkro_0356";i:12;s:43:"Lysine 2;3-aminomutase YodO family protein ";i:13;s:11:"Calkro_0356";i:14;s:11:"Single gene";i:15;s:7:"2987756";i:16;s:11:"Calkro_0356";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"543623-543773";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"542257-543616";i:10;s:1:"-";i:11;s:11:"Calkro_0420";i:12;s:28:"Pyruvate carboxyltransferase";i:13;s:11:"Calkro_0420";i:14;s:11:"Single gene";i:15;s:7:"2987777";i:16;s:11:"Calkro_0420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"699201-699368";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"699732-702420";i:10;s:1:"+";i:11;s:11:"Calkro_0566";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:11:"Calkro_0566";i:14;s:11:"Single gene";i:15;s:7:"2987804";i:16;s:11:"Calkro_0566";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"968311-968472";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"968476-969436";i:10;s:1:"+";i:11;s:11:"Calkro_0823";i:12;s:15:"NLP/P60 protein";i:13;s:11:"Calkro_0823";i:14;s:11:"Single gene";i:15;s:7:"2987861";i:16;s:11:"Calkro_0823";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"989712-989801";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"989950-991900";i:10;s:1:"+";i:11;s:11:"Calkro_0845";i:12;s:23:"Uncharacterized protein";i:13;s:11:"Calkro_0845";i:14;s:11:"single gene";i:15;s:7:"2987864";i:16;s:11:"Calkro_0845";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"996348-996437";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:14:"996998-1002188";i:10;s:1:"+";i:11;s:11:"Calkro_0850";i:12;s:14:"Endoglucanase ";i:13;s:11:"Calkro_0850";i:14;s:11:"single gene";i:15;s:7:"2987866";i:16;s:11:"Calkro_0850";i:17;s:40:"cellulose catabolic process [GO:0030245]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1045800-1045897";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1046037-1046457";i:10;s:1:"+";i:11;s:11:"Calkro_0870";i:12;s:23:"Uncharacterized protein";i:13;s:11:"Calkro_0870";i:14;s:11:"single gene";i:15;s:7:"2987878";i:16;s:11:"Calkro_0870";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1728690-1728873";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1728994-1729996";i:10;s:1:"+";i:11;s:11:"Calkro_1562";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:11:"Calkro_1562";i:14;s:6:"Operon";i:15;s:6:"770074";i:16;s:47:"Calkro_1562;Calkro_1563;Calkro_1564;Calkro_1565";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1744691-1744811";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1743301-1744579";i:10;s:1:"-";i:11;s:11:"Calkro_1573";i:12;s:47:"O-acetylhomoserine/O-acetylserine sulfhydrylase";i:13;s:11:"Calkro_1573";i:14;s:6:"Operon";i:15;s:6:"770076";i:16;s:47:"Calkro_1570;Calkro_1571;Calkro_1572;Calkro_1573";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1993842-1993974";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1992934-1993750";i:10;s:1:"-";i:11;s:11:"Calkro_1829";i:12;s:45:"Extracellular solute-binding protein family 1";i:13;s:11:"Calkro_1829";i:14;s:6:"Operon";i:15;s:6:"770120";i:16;s:83:"Calkro_1823;Calkro_1824;Calkro_1825;Calkro_1826;Calkro_1827;Calkro_1828;Calkro_1829";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2128456-2128580";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2127153-2128344";i:10;s:1:"-";i:11;s:11:"Calkro_1946";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:11:"Calkro_1946";i:14;s:11:"Single gene";i:15;s:7:"2988073";i:16;s:11:"Calkro_1946";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2152418-2152574";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2150838-2152092";i:10;s:1:"-";i:11;s:11:"Calkro_1970";i:12;s:25:"MgtE intracellular region";i:13;s:11:"Calkro_1970";i:14;s:6:"Operon";i:15;s:6:"770153";i:16;s:23:"Calkro_1969;Calkro_1970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2234824-2234887";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2234333-2234732";i:10;s:1:"-";i:11;s:11:"Calkro_2040";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"Calkro_2040";i:14;s:6:"Operon";i:15;s:6:"770171";i:16;s:23:"Calkro_2039;Calkro_2040";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2260386-2260514";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2260636-2261752";i:10;s:1:"+";i:11;s:11:"Calkro_2068";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:11:"Calkro_2068";i:14;s:6:"Operon";i:15;s:6:"770177";i:16;s:47:"Calkro_2068;Calkro_2069;Calkro_2070;Calkro_2071";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014720.1";i:2;s:41:"Caldicellulosiruptor kronotskyensis 2002 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2469742-2469876";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2469418-2469694";i:10;s:1:"-";i:11;s:11:"Calkro_2260";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:11:"Calkro_2260";i:14;s:6:"Operon";i:15;s:6:"770217";i:16;s:95:"Calkro_2253;Calkro_2254;Calkro_2255;Calkro_2256;Calkro_2257;Calkro_2258;Calkro_2259;Calkro_2260";i:17;s:0:"";i:18;s:15:"View Structure ";}}