About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
178020-178081
(-)
SAM
176491-177775 (-)
FraEuI1c_0137
Threonine synthase
FraEuI1c_0137
Single gene
DOOR ID:
2984068
FraEuI1c_0137
View Structure
2
271426-271597
(-)
ydaO-yuaA
270669-271422 (-)
FraEuI1c_0202
Transglycosylase-like domain protein
FraEuI1c_0202
Operon
DOOR ID:
768279
FraEuI1c_0201,
FraEuI1c_0202
View Structure
3
273023-273334
(-)
ydaO-yuaA
272170-272983 (-)
FraEuI1c_0203
Transglycosylase-like domain protein
FraEuI1c_0203
Single gene
DOOR ID:
2984104
FraEuI1c_0203
View Structure
4
572740-572831
(+)
cobalamin
572912-575093 (+)
FraEuI1c_0473
Magnesium chelatase
FraEuI1c_0473
Operon
DOOR ID:
768325
FraEuI1c_0473,
FraEuI1c_0474,
FraEuI1c_0475,
FraEuI1c_0476,
FraEuI1c_0477,
FraEuI1c_0478,
FraEuI1c_0479
View Structure
5
611999-612109
(-)
SAM-IV
610897-611947 (-)
FraEuI1c_0500
FraEuI1c_0500
Operon
DOOR ID:
768329
FraEuI1c_0499,
FraEuI1c_0500
View Structure
6
631170-631266
(+)
glycine
631543-634606 (+)
FraEuI1c_0513
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
FraEuI1c_0513
Single gene
DOOR ID:
2984266
FraEuI1c_0513
View Structure
7
631267-631404
(+)
glycine
631543-634606 (+)
FraEuI1c_0513
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
FraEuI1c_0513
Single gene
DOOR ID:
2984266
FraEuI1c_0513
View Structure
8
1735884-1736082
(-)
cobalamin
1735185-1735839 (-)
FraEuI1c_1386
Cob(II)yrinic acid a;c-diamide reductase
FraEuI1c_1386
Operon
DOOR ID:
768495
FraEuI1c_1385,
FraEuI1c_1386
View Structure
9
2079410-2079541
(+)
FMN
2079700-2080498 (+)
FraEuI1c_1696
Riboflavin synthase; alpha subunit
FraEuI1c_1696
Operon
DOOR ID:
768554
FraEuI1c_1696,
FraEuI1c_1697,
FraEuI1c_1698
View Structure
10
2239806-2239920
(+)
TPP
2239943-2240774 (+)
FraEuI1c_1824
Thiazole synthase (0)
FraEuI1c_1824
Operon
DOOR ID:
768583
FraEuI1c_1824,
FraEuI1c_1825
View Structure
11
3549540-3549740
(+)
ydaO-yuaA
3549758-3550805 (+)
FraEuI1c_2938
NLP/P60 protein
FraEuI1c_2938
Single gene
DOOR ID:
2985385
FraEuI1c_2938
View Structure
12
3629576-3629676
(+)
SAH
3629695-3633406 (+)
FraEuI1c_2999
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
FraEuI1c_2999
Single gene
DOOR ID:
2985415
FraEuI1c_2999
View Structure
13
3709895-3710010
(+)
SAM-IV
3710043-3711696 (+)
FraEuI1c_3067
Cysteine desulfurase
FraEuI1c_3067
Single gene
DOOR ID:
2985453
FraEuI1c_3067
View Structure
14
4835038-4835195
(-)
cobalamin
4834785-4835004 (-)
FraEuI1c_3964
FraEuI1c_3964
Operon
DOOR ID:
768976
FraEuI1c_3963,
FraEuI1c_3964
View Structure
15
5267331-5267378
(+)
mini-ykkC
5268491-5269322 (+)
FraEuI1c_4301
FraEuI1c_4301
Operon
DOOR ID:
769035
FraEuI1c_4300,
FraEuI1c_4301,
FraEuI1c_4302
View Structure
16
5311937-5312060
(-)
TPP
5309649-5310117 (+)
FraEuI1c_4338
Regulatory protein MarR
FraEuI1c_4338
Single gene
DOOR ID:
2986039
FraEuI1c_4338
View Structure
17
6343804-6343890
(-)
ZMP-ZTP
6342377-6343640 (-)
FraEuI1c_5151
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
FraEuI1c_5151
Single gene
DOOR ID:
2986398
FraEuI1c_5151
View Structure
18
8198304-8198475
(+)
ydaO-yuaA
8198553-8199234 (+)
FraEuI1c_6704
Peptidoglycan-binding domain 1 protein
FraEuI1c_6704
Single gene
DOOR ID:
2987104
FraEuI1c_6704
View Structure
19
8358969-8359174
(+)
ydaO-yuaA
8359181-8360246 (+)
FraEuI1c_6833
NLP/P60 protein
FraEuI1c_6833
Single gene
DOOR ID:
2987170
FraEuI1c_6833
View Structure
Genome:
Frankia sp. EuI1c
(
NC_014666.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"178020-178081";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"176491-177775";i:10;s:1:"-";i:11;s:13:"FraEuI1c_0137";i:12;s:18:"Threonine synthase";i:13;s:13:"FraEuI1c_0137";i:14;s:11:"Single gene";i:15;s:7:"2984068";i:16;s:13:"FraEuI1c_0137";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"271426-271597";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"270669-271422";i:10;s:1:"-";i:11;s:13:"FraEuI1c_0202";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:13:"FraEuI1c_0202";i:14;s:6:"Operon";i:15;s:6:"768279";i:16;s:27:"FraEuI1c_0201;FraEuI1c_0202";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"273023-273334";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"272170-272983";i:10;s:1:"-";i:11;s:13:"FraEuI1c_0203";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:13:"FraEuI1c_0203";i:14;s:11:"Single gene";i:15;s:7:"2984104";i:16;s:13:"FraEuI1c_0203";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"572740-572831";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"572912-575093";i:10;s:1:"+";i:11;s:13:"FraEuI1c_0473";i:12;s:20:"Magnesium chelatase ";i:13;s:13:"FraEuI1c_0473";i:14;s:6:"Operon";i:15;s:6:"768325";i:16;s:97:"FraEuI1c_0473;FraEuI1c_0474;FraEuI1c_0475;FraEuI1c_0476;FraEuI1c_0477;FraEuI1c_0478;FraEuI1c_0479";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"611999-612109";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"610897-611947";i:10;s:1:"-";i:11;s:13:"FraEuI1c_0500";i:12;s:0:"";i:13;s:13:"FraEuI1c_0500";i:14;s:6:"Operon";i:15;s:6:"768329";i:16;s:27:"FraEuI1c_0499;FraEuI1c_0500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"631170-631266";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"631543-634606";i:10;s:1:"+";i:11;s:13:"FraEuI1c_0513";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:13:"FraEuI1c_0513";i:14;s:11:"Single gene";i:15;s:7:"2984266";i:16;s:13:"FraEuI1c_0513";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"631267-631404";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"631543-634606";i:10;s:1:"+";i:11;s:13:"FraEuI1c_0513";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:13:"FraEuI1c_0513";i:14;s:11:"Single gene";i:15;s:7:"2984266";i:16;s:13:"FraEuI1c_0513";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1735884-1736082";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1735185-1735839";i:10;s:1:"-";i:11;s:13:"FraEuI1c_1386";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:13:"FraEuI1c_1386";i:14;s:6:"Operon";i:15;s:6:"768495";i:16;s:27:"FraEuI1c_1385;FraEuI1c_1386";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2079410-2079541";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2079700-2080498";i:10;s:1:"+";i:11;s:13:"FraEuI1c_1696";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:13:"FraEuI1c_1696";i:14;s:6:"Operon";i:15;s:6:"768554";i:16;s:41:"FraEuI1c_1696;FraEuI1c_1697;FraEuI1c_1698";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2239806-2239920";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2239943-2240774";i:10;s:1:"+";i:11;s:13:"FraEuI1c_1824";i:12;s:21:"Thiazole synthase (0)";i:13;s:13:"FraEuI1c_1824";i:14;s:6:"Operon";i:15;s:6:"768583";i:16;s:27:"FraEuI1c_1824;FraEuI1c_1825";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3549540-3549740";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3549758-3550805";i:10;s:1:"+";i:11;s:13:"FraEuI1c_2938";i:12;s:15:"NLP/P60 protein";i:13;s:13:"FraEuI1c_2938";i:14;s:11:"Single gene";i:15;s:7:"2985385";i:16;s:13:"FraEuI1c_2938";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3629576-3629676";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3629695-3633406";i:10;s:1:"+";i:11;s:13:"FraEuI1c_2999";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:13:"FraEuI1c_2999";i:14;s:11:"Single gene";i:15;s:7:"2985415";i:16;s:13:"FraEuI1c_2999";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3709895-3710010";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3710043-3711696";i:10;s:1:"+";i:11;s:13:"FraEuI1c_3067";i:12;s:21:"Cysteine desulfurase ";i:13;s:13:"FraEuI1c_3067";i:14;s:11:"Single gene";i:15;s:7:"2985453";i:16;s:13:"FraEuI1c_3067";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4835038-4835195";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4834785-4835004";i:10;s:1:"-";i:11;s:13:"FraEuI1c_3964";i:12;s:0:"";i:13;s:13:"FraEuI1c_3964";i:14;s:6:"Operon";i:15;s:6:"768976";i:16;s:27:"FraEuI1c_3963;FraEuI1c_3964";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5267331-5267378";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5268491-5269322";i:10;s:1:"+";i:11;s:13:"FraEuI1c_4301";i:12;s:0:"";i:13;s:13:"FraEuI1c_4301";i:14;s:6:"Operon";i:15;s:6:"769035";i:16;s:41:"FraEuI1c_4300;FraEuI1c_4301;FraEuI1c_4302";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5311937-5312060";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5309649-5310117";i:10;s:1:"+";i:11;s:13:"FraEuI1c_4338";i:12;s:23:"Regulatory protein MarR";i:13;s:13:"FraEuI1c_4338";i:14;s:11:"Single gene";i:15;s:7:"2986039";i:16;s:13:"FraEuI1c_4338";i:17;s:41:"transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6343804-6343890";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"6342377-6343640";i:10;s:1:"-";i:11;s:13:"FraEuI1c_5151";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:13:"FraEuI1c_5151";i:14;s:11:"Single gene";i:15;s:7:"2986398";i:16;s:13:"FraEuI1c_5151";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"8198304-8198475";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"8198553-8199234";i:10;s:1:"+";i:11;s:13:"FraEuI1c_6704";i:12;s:38:"Peptidoglycan-binding domain 1 protein";i:13;s:13:"FraEuI1c_6704";i:14;s:11:"Single gene";i:15;s:7:"2987104";i:16;s:13:"FraEuI1c_6704";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_014666.1";i:2;s:18:"Frankia sp. EuI1c ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"8358969-8359174";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"8359181-8360246";i:10;s:1:"+";i:11;s:13:"FraEuI1c_6833";i:12;s:15:"NLP/P60 protein";i:13;s:13:"FraEuI1c_6833";i:14;s:11:"Single gene";i:15;s:7:"2987170";i:16;s:13:"FraEuI1c_6833";i:17;s:0:"";i:18;s:15:"View Structure ";}}
