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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
285726-285850
(+)
TPP
285994-286186 (+)
Calow_0238
Thiamine biosynthesis protein ThiS
Calow_0238
Operon
DOOR ID:
765957
Calow_0238,
Calow_0239,
Calow_0240,
Calow_0241,
Calow_0242,
Calow_0243,
Calow_0244,
Calow_0245
View Structure
2
494304-494432
(-)
FMN
493069-494185 (-)
Calow_0428
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Calow_0428
Operon
DOOR ID:
765992
Calow_0425,
Calow_0426,
Calow_0427,
Calow_0428
View Structure
3
521273-521336
(+)
fluoride
521821-522178 (+)
Calow_0456
Putative fluoride ion transporter CrcB
Calow_0456
Operon
DOOR ID:
765997
Calow_0455,
Calow_0456
View Structure
4
612869-613027
(+)
ykoK
613151-613274 (+)
Calow_0532
Calow_0532
Operon
DOOR ID:
766016
Calow_0532,
Calow_0533,
Calow_0534
View Structure
5
630407-630531
(+)
SAM
630647-631838 (+)
Calow_0547
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Calow_0547
Single gene
DOOR ID:
2980195
Calow_0547
View Structure
6
772179-772312
(+)
MOCO
772404-773220 (+)
Calow_0671
Extracellular solute-binding protein family 1
Calow_0671
Operon
DOOR ID:
766046
Calow_0671,
Calow_0672,
Calow_0673,
Calow_0674,
Calow_0675,
Calow_0676,
Calow_0677
View Structure
7
1024498-1024623
(+)
SAM
1024735-1026013 (+)
Calow_0939
O-acetylhomoserine/O-acetylserine sulfhydrylase (7)
Calow_0939
Single gene
DOOR ID:
2980263
Calow_0939
View Structure
8
1038627-1038810
(-)
lysine
1037505-1038507 (-)
Calow_0949
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Calow_0949
Operon
DOOR ID:
766093
Calow_0946,
Calow_0947,
Calow_0948,
Calow_0949
View Structure
9
1656217-1656306
(-)
c-di-GMP-I
1655665-1656085 (-)
Calow_1587
Uncharacterized protein
Calow_1587
single gene
DOOR ID:
2980380
Calow_1587
View Structure
10
1682288-1682450
(-)
ydaO-yuaA
1681323-1682283 (-)
Calow_1608
NLP/P60 protein
Calow_1608
Single gene
DOOR ID:
2980384
Calow_1608
View Structure
11
1710650-1710761
(-)
glycine
1708824-1709664 (-)
Calow_1638
PHP domain protein
Calow_1638
Operon
DOOR ID:
766220
Calow_1636,
Calow_1637,
Calow_1638
View Structure
12
2002793-2002945
(+)
ydaO-yuaA
2002951-2004310 (+)
Calow_1908
Pyruvate carboxyltransferase
Calow_1908
Single gene
DOOR ID:
2980457
Calow_1908
View Structure
13
2040963-2041037
(-)
fluoride
2040254-2040890 (-)
Calow_1937
Calow_1937
Operon
DOOR ID:
766282
Calow_1934,
Calow_1935,
Calow_1936,
Calow_1937
View Structure
14
2075907-2076056
(-)
ydaO-yuaA
2074549-2075773 (-)
Calow_1972
Lysine 2;3-aminomutase YodO family protein
Calow_1972
Single gene
DOOR ID:
2980473
Calow_1972
View Structure
15
2164454-2164622
(-)
glmS
2162544-2164380 (-)
Calow_2052
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Calow_2052
Single gene
DOOR ID:
2980510
Calow_2052
View Structure
16
2285110-2285334
(+)
cobalamin
2285594-2287868 (+)
Calow_2143
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
Calow_2143
Single gene
DOOR ID:
2980548
Calow_2143
View Structure
17
2385460-2385548
(-)
c-di-GMP-I
2384411-2385395 (-)
Calow_2219
Uncharacterized protein
Calow_2219
single gene
DOOR ID:
2980579
Calow_2219
View Structure
Genome:
Caldicellulosiruptor owensensis OL
(
NC_014657.1
);
Phylum:
Firmicutes
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"285726-285850";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"285994-286186";i:10;s:1:"+";i:11;s:10:"Calow_0238";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Calow_0238";i:14;s:6:"Operon";i:15;s:6:"765957";i:16;s:87:"Calow_0238;Calow_0239;Calow_0240;Calow_0241;Calow_0242;Calow_0243;Calow_0244;Calow_0245";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"494304-494432";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"493069-494185";i:10;s:1:"-";i:11;s:10:"Calow_0428";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Calow_0428";i:14;s:6:"Operon";i:15;s:6:"765992";i:16;s:43:"Calow_0425;Calow_0426;Calow_0427;Calow_0428";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"521273-521336";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"521821-522178";i:10;s:1:"+";i:11;s:10:"Calow_0456";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Calow_0456";i:14;s:6:"Operon";i:15;s:6:"765997";i:16;s:21:"Calow_0455;Calow_0456";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"612869-613027";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"613151-613274";i:10;s:1:"+";i:11;s:10:"Calow_0532";i:12;s:0:"";i:13;s:10:"Calow_0532";i:14;s:6:"Operon";i:15;s:6:"766016";i:16;s:32:"Calow_0532;Calow_0533;Calow_0534";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"630407-630531";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"630647-631838";i:10;s:1:"+";i:11;s:10:"Calow_0547";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"Calow_0547";i:14;s:11:"Single gene";i:15;s:7:"2980195";i:16;s:10:"Calow_0547";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"772179-772312";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"772404-773220";i:10;s:1:"+";i:11;s:10:"Calow_0671";i:12;s:45:"Extracellular solute-binding protein family 1";i:13;s:10:"Calow_0671";i:14;s:6:"Operon";i:15;s:6:"766046";i:16;s:76:"Calow_0671;Calow_0672;Calow_0673;Calow_0674;Calow_0675;Calow_0676;Calow_0677";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1024498-1024623";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1024735-1026013";i:10;s:1:"+";i:11;s:10:"Calow_0939";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (7)";i:13;s:10:"Calow_0939";i:14;s:11:"Single gene";i:15;s:7:"2980263";i:16;s:10:"Calow_0939";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1038627-1038810";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1037505-1038507";i:10;s:1:"-";i:11;s:10:"Calow_0949";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:10:"Calow_0949";i:14;s:6:"Operon";i:15;s:6:"766093";i:16;s:43:"Calow_0946;Calow_0947;Calow_0948;Calow_0949";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1656217-1656306";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1655665-1656085";i:10;s:1:"-";i:11;s:10:"Calow_1587";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Calow_1587";i:14;s:11:"single gene";i:15;s:7:"2980380";i:16;s:10:"Calow_1587";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1682288-1682450";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1681323-1682283";i:10;s:1:"-";i:11;s:10:"Calow_1608";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Calow_1608";i:14;s:11:"Single gene";i:15;s:7:"2980384";i:16;s:10:"Calow_1608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1710650-1710761";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1708824-1709664";i:10;s:1:"-";i:11;s:10:"Calow_1638";i:12;s:18:"PHP domain protein";i:13;s:10:"Calow_1638";i:14;s:6:"Operon";i:15;s:6:"766220";i:16;s:32:"Calow_1636;Calow_1637;Calow_1638";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2002793-2002945";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2002951-2004310";i:10;s:1:"+";i:11;s:10:"Calow_1908";i:12;s:28:"Pyruvate carboxyltransferase";i:13;s:10:"Calow_1908";i:14;s:11:"Single gene";i:15;s:7:"2980457";i:16;s:10:"Calow_1908";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2040963-2041037";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2040254-2040890";i:10;s:1:"-";i:11;s:10:"Calow_1937";i:12;s:0:"";i:13;s:10:"Calow_1937";i:14;s:6:"Operon";i:15;s:6:"766282";i:16;s:43:"Calow_1934;Calow_1935;Calow_1936;Calow_1937";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2075907-2076056";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2074549-2075773";i:10;s:1:"-";i:11;s:10:"Calow_1972";i:12;s:43:"Lysine 2;3-aminomutase YodO family protein ";i:13;s:10:"Calow_1972";i:14;s:11:"Single gene";i:15;s:7:"2980473";i:16;s:10:"Calow_1972";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2164454-2164622";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2162544-2164380";i:10;s:1:"-";i:11;s:10:"Calow_2052";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Calow_2052";i:14;s:11:"Single gene";i:15;s:7:"2980510";i:16;s:10:"Calow_2052";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2285110-2285334";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2285594-2287868";i:10;s:1:"+";i:11;s:10:"Calow_2143";i:12;s:73:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)";i:13;s:10:"Calow_2143";i:14;s:11:"Single gene";i:15;s:7:"2980548";i:16;s:10:"Calow_2143";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014657.1";i:2;s:35:"Caldicellulosiruptor owensensis OL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2385460-2385548";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2384411-2385395";i:10;s:1:"-";i:11;s:10:"Calow_2219";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Calow_2219";i:14;s:11:"single gene";i:15;s:7:"2980579";i:16;s:10:"Calow_2219";i:17;s:0:"";i:18;s:15:"View Structure ";}}