About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
410131-410223
(-)
TPP
409297-410089 (-)
Lbys_0383
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Lbys_0383
Operon
DOOR ID:
764833
Lbys_0380,
Lbys_0381,
Lbys_0382,
Lbys_0383
View Structure
2
1594666-1594865
(+)
cobalamin
1594904-1596782 (+)
Lbys_1540
TonB-dependent receptor
Lbys_1540
Operon
DOOR ID:
765089
Lbys_1540,
Lbys_1541
View Structure
3
2239326-2239496
(-)
cobalamin
2237129-2239310 (-)
Lbys_2089
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Lbys_2089
Single gene
DOOR ID:
2978719
Lbys_2089
View Structure
4
3506917-3507013
(-)
TPP
3504604-3506791 (-)
Lbys_3109
TonB-dependent receptor
Lbys_3109
Single gene
DOOR ID:
2978997
Lbys_3109
View Structure
5
3638398-3638505
(+)
SAM
3638577-3639597 (+)
Lbys_3238
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Lbys_3238
Single gene
DOOR ID:
2979033
Lbys_3238
View Structure
Genome:
Leadbetterella byssophila DSM 17132
(
NC_014655.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014655.1";i:2;s:36:"Leadbetterella byssophila DSM 17132 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"410131-410223";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"409297-410089";i:10;s:1:"-";i:11;s:9:"Lbys_0383";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Lbys_0383";i:14;s:6:"Operon";i:15;s:6:"764833";i:16;s:39:"Lbys_0380;Lbys_0381;Lbys_0382;Lbys_0383";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014655.1";i:2;s:36:"Leadbetterella byssophila DSM 17132 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1594666-1594865";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1594904-1596782";i:10;s:1:"+";i:11;s:9:"Lbys_1540";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Lbys_1540";i:14;s:6:"Operon";i:15;s:6:"765089";i:16;s:19:"Lbys_1540;Lbys_1541";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014655.1";i:2;s:36:"Leadbetterella byssophila DSM 17132 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2239326-2239496";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2237129-2239310";i:10;s:1:"-";i:11;s:9:"Lbys_2089";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Lbys_2089";i:14;s:11:"Single gene";i:15;s:7:"2978719";i:16;s:9:"Lbys_2089";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014655.1";i:2;s:36:"Leadbetterella byssophila DSM 17132 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3506917-3507013";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3504604-3506791";i:10;s:1:"-";i:11;s:9:"Lbys_3109";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Lbys_3109";i:14;s:11:"Single gene";i:15;s:7:"2978997";i:16;s:9:"Lbys_3109";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014655.1";i:2;s:36:"Leadbetterella byssophila DSM 17132 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3638398-3638505";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3638577-3639597";i:10;s:1:"+";i:11;s:9:"Lbys_3238";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Lbys_3238";i:14;s:11:"Single gene";i:15;s:7:"2979033";i:16;s:9:"Lbys_3238";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}}