About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
261272-261468
(+)
glmS
261543-263379 (+)
Calhy_0203
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Calhy_0203
Operon
DOOR ID:
764126
Calhy_0203,
Calhy_0204
View Structure
2
357513-357737
(-)
cobalamin
354980-357254 (-)
Calhy_0286
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
Calhy_0286
Single gene
DOOR ID:
2976969
Calhy_0286
View Structure
3
526541-526690
(+)
ydaO-yuaA
526827-528057 (+)
Calhy_0483
Lysine 2;3-aminomutase YodO family protein
Calhy_0483
Single gene
DOOR ID:
2977017
Calhy_0483
View Structure
4
557892-557966
(+)
fluoride
558688-561103 (+)
Calhy_0513
Calhy_0513
Operon
DOOR ID:
764195
Calhy_0513,
Calhy_0514,
Calhy_0515,
Calhy_0516,
Calhy_0517,
Calhy_0518,
Calhy_0519,
Calhy_0520
View Structure
5
595608-595758
(-)
ydaO-yuaA
594242-595601 (-)
Calhy_0541
Pyruvate carboxyltransferase
Calhy_0541
Single gene
DOOR ID:
2977031
Calhy_0541
View Structure
6
928726-928885
(+)
ydaO-yuaA
928889-929849 (+)
Calhy_0892
NLP/P60 protein
Calhy_0892
Single gene
DOOR ID:
2977097
Calhy_0892
View Structure
7
943671-943760
(+)
c-di-GMP-I
944001-944568 (-)
Calhy_0909
Phage SPO1 DNA polymerase-related protein
Calhy_0909
operon
DOOR ID:
764279
Calhy_0909,
Calhy_0910,
Calhy_0911
View Structure
8
1624248-1624431
(+)
lysine
1624552-1625554 (+)
Calhy_1599
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Calhy_1599
Operon
DOOR ID:
764407
Calhy_1599,
Calhy_1600,
Calhy_1601,
Calhy_1602
View Structure
9
1640252-1640373
(-)
SAM
1638861-1640139 (-)
Calhy_1610
O-acetylhomoserine/O-acetylserine sulfhydrylase (7)
Calhy_1610
Operon
DOOR ID:
764409
Calhy_1607,
Calhy_1608,
Calhy_1609,
Calhy_1610
View Structure
10
1893627-1893758
(-)
MOCO
1891858-1893289 (+)
Calhy_1862
Calhy_1862
Operon
DOOR ID:
764457
Calhy_1862,
Calhy_1863
View Structure
11
2030221-2030345
(-)
SAM
2028915-2030106 (-)
Calhy_1983
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Calhy_1983
Single gene
DOOR ID:
2977311
Calhy_1983
View Structure
12
2048905-2049061
(-)
ykoK
2048646-2048775 (-)
Calhy_2000
Calhy_2000
Operon
DOOR ID:
764488
Calhy_1998,
Calhy_1999,
Calhy_2000
View Structure
13
2128703-2128766
(-)
fluoride
2128212-2128611 (-)
Calhy_2068
Putative fluoride ion transporter CrcB
Calhy_2068
Operon
DOOR ID:
764508
Calhy_2067,
Calhy_2068
View Structure
14
2142548-2142682
(+)
FMN
2142804-2143920 (+)
Calhy_2083
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Calhy_2083
Operon
DOOR ID:
764512
Calhy_2083,
Calhy_2084,
Calhy_2085,
Calhy_2086
View Structure
15
2366576-2366701
(-)
TPP
2366213-2366408 (-)
Calhy_2280
Thiamine biosynthesis protein ThiS
Calhy_2280
Single gene
DOOR ID:
2977401
Calhy_2280
View Structure
16
2712180-2712272
(-)
c-di-GMP-I
2711611-2712157 (+)
Calhy_2571
Uncharacterized protein
Calhy_2571
single gene
DOOR ID:
2977492
Calhy_2571
View Structure
Genome:
Caldicellulosiruptor hydrothermalis 108
(
NC_014652.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"261272-261468";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"261543-263379";i:10;s:1:"+";i:11;s:10:"Calhy_0203";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Calhy_0203";i:14;s:6:"Operon";i:15;s:6:"764126";i:16;s:21:"Calhy_0203;Calhy_0204";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"357513-357737";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"354980-357254";i:10;s:1:"-";i:11;s:10:"Calhy_0286";i:12;s:73:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)";i:13;s:10:"Calhy_0286";i:14;s:11:"Single gene";i:15;s:7:"2976969";i:16;s:10:"Calhy_0286";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"526541-526690";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"526827-528057";i:10;s:1:"+";i:11;s:10:"Calhy_0483";i:12;s:43:"Lysine 2;3-aminomutase YodO family protein ";i:13;s:10:"Calhy_0483";i:14;s:11:"Single gene";i:15;s:7:"2977017";i:16;s:10:"Calhy_0483";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"557892-557966";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"558688-561103";i:10;s:1:"+";i:11;s:10:"Calhy_0513";i:12;s:0:"";i:13;s:10:"Calhy_0513";i:14;s:6:"Operon";i:15;s:6:"764195";i:16;s:87:"Calhy_0513;Calhy_0514;Calhy_0515;Calhy_0516;Calhy_0517;Calhy_0518;Calhy_0519;Calhy_0520";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"595608-595758";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"594242-595601";i:10;s:1:"-";i:11;s:10:"Calhy_0541";i:12;s:28:"Pyruvate carboxyltransferase";i:13;s:10:"Calhy_0541";i:14;s:11:"Single gene";i:15;s:7:"2977031";i:16;s:10:"Calhy_0541";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"928726-928885";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"928889-929849";i:10;s:1:"+";i:11;s:10:"Calhy_0892";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Calhy_0892";i:14;s:11:"Single gene";i:15;s:7:"2977097";i:16;s:10:"Calhy_0892";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"943671-943760";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"944001-944568";i:10;s:1:"-";i:11;s:10:"Calhy_0909";i:12;s:41:"Phage SPO1 DNA polymerase-related protein";i:13;s:10:"Calhy_0909";i:14;s:6:"operon";i:15;s:6:"764279";i:16;s:32:"Calhy_0909;Calhy_0910;Calhy_0911";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1624248-1624431";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1624552-1625554";i:10;s:1:"+";i:11;s:10:"Calhy_1599";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:10:"Calhy_1599";i:14;s:6:"Operon";i:15;s:6:"764407";i:16;s:43:"Calhy_1599;Calhy_1600;Calhy_1601;Calhy_1602";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1640252-1640373";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1638861-1640139";i:10;s:1:"-";i:11;s:10:"Calhy_1610";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (7)";i:13;s:10:"Calhy_1610";i:14;s:6:"Operon";i:15;s:6:"764409";i:16;s:43:"Calhy_1607;Calhy_1608;Calhy_1609;Calhy_1610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1893627-1893758";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1891858-1893289";i:10;s:1:"+";i:11;s:10:"Calhy_1862";i:12;s:0:"";i:13;s:10:"Calhy_1862";i:14;s:6:"Operon";i:15;s:6:"764457";i:16;s:21:"Calhy_1862;Calhy_1863";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2030221-2030345";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2028915-2030106";i:10;s:1:"-";i:11;s:10:"Calhy_1983";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"Calhy_1983";i:14;s:11:"Single gene";i:15;s:7:"2977311";i:16;s:10:"Calhy_1983";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2048905-2049061";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2048646-2048775";i:10;s:1:"-";i:11;s:10:"Calhy_2000";i:12;s:0:"";i:13;s:10:"Calhy_2000";i:14;s:6:"Operon";i:15;s:6:"764488";i:16;s:32:"Calhy_1998;Calhy_1999;Calhy_2000";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2128703-2128766";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2128212-2128611";i:10;s:1:"-";i:11;s:10:"Calhy_2068";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Calhy_2068";i:14;s:6:"Operon";i:15;s:6:"764508";i:16;s:21:"Calhy_2067;Calhy_2068";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2142548-2142682";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2142804-2143920";i:10;s:1:"+";i:11;s:10:"Calhy_2083";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Calhy_2083";i:14;s:6:"Operon";i:15;s:6:"764512";i:16;s:43:"Calhy_2083;Calhy_2084;Calhy_2085;Calhy_2086";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2366576-2366701";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2366213-2366408";i:10;s:1:"-";i:11;s:10:"Calhy_2280";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Calhy_2280";i:14;s:11:"Single gene";i:15;s:7:"2977401";i:16;s:10:"Calhy_2280";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014652.1";i:2;s:40:"Caldicellulosiruptor hydrothermalis 108 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2712180-2712272";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2711611-2712157";i:10;s:1:"+";i:11;s:10:"Calhy_2571";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Calhy_2571";i:14;s:11:"single gene";i:15;s:7:"2977492";i:16;s:10:"Calhy_2571";i:17;s:0:"";i:18;s:15:"View Structure ";}}