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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
56045-56199
(-)
FMN
55213-55933 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
AXYL_00056
Single gene
DOOR ID:
2971769
AXYL_00056
(ribB)
View Structure
2
334091-334213
(+)
SAH
334418-336884 (+)
fdnG
Formate dehydrogenase-N; alpha subunit
AXYL_00319
Operon
DOOR ID:
761244
AXYL_00318,
AXYL_00319
(fdnG)
,
AXYL_00320
(fdxH)
,
AXYL_00321
View Structure
3
499697-499778
(+)
sam-alpha
501023-501638 (+)
metW
Methionine biosynthesis protein MetW
AXYL_00477
Operon
DOOR ID:
761276
AXYL_00476
(metX1)
,
AXYL_00477
(metW)
View Structure
4
1076005-1076204
(+)
yybP-ykoY
1076245-1077250 (+)
AXYL_00997
Sodium/calcium exchanger family protein
AXYL_00997
Single gene
DOOR ID:
2972114
AXYL_00997
View Structure
5
1403287-1403461
(+)
yybP-ykoY
1404095-1404875 (-)
AXYL_01332
Bacterial-like globin family protein 1
AXYL_01332
Operon
DOOR ID:
761442
AXYL_01332,
AXYL_01333
View Structure
6
2741883-2741989
(+)
TPP
2742096-2743548 (+)
AXYL_02582
Sodium:solute symporter family protein 2
AXYL_02582
Single gene
DOOR ID:
2972623
AXYL_02582
View Structure
7
4603673-4603765
(+)
glycine
4603899-4605129 (+)
dadA4
D-amino acid dehydrogenase small subunit 4
AXYL_04304
Single gene
DOOR ID:
2973184
AXYL_04304
(dadA4)
View Structure
8
4603767-4603855
(+)
glycine
4603899-4605129 (+)
dadA4
D-amino acid dehydrogenase small subunit 4
AXYL_04304
Single gene
DOOR ID:
2973184
AXYL_04304
(dadA4)
View Structure
9
6045885-6046007
(-)
glycine
6044697-6045798 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
AXYL_05636
Operon
DOOR ID:
762355
AXYL_05635
(gcvH)
,
AXYL_05636
(gcvT)
View Structure
10
6046043-6046138
(-)
glycine
6044697-6045798 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
AXYL_05636
Operon
DOOR ID:
762355
AXYL_05635
(gcvH)
,
AXYL_05636
(gcvT)
View Structure
11
6530964-6531069
(+)
TPP
6531134-6533048 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AXYL_06063
Single gene
DOOR ID:
2973712
AXYL_06063
(thiC)
View Structure
12
6704911-6705045
(-)
SAH
6703391-6704810 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
AXYL_06232
Single gene
DOOR ID:
2973766
AXYL_06232
(ahcY)
View Structure
Genome:
Achromobacter xylosoxidans A8
(
NC_014640.1
);
Phylum:
Betaproteobacteria
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alpha subunit ";i:13;s:10:"AXYL_00319";i:14;s:6:"Operon";i:15;s:6:"761244";i:16;s:55:"AXYL_00318;AXYL_00319(fdnG);AXYL_00320(fdxH);AXYL_00321";i:17;s:33:"cellular respiration [GO:0045333]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"499697-499778";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"501023-501638";i:10;s:1:"+";i:11;s:4:"metW";i:12;s:36:"Methionine biosynthesis protein MetW";i:13;s:10:"AXYL_00477";i:14;s:6:"Operon";i:15;s:6:"761276";i:16;s:34:"AXYL_00476(metX1);AXYL_00477(metW)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1076005-1076204";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1076245-1077250";i:10;s:1:"+";i:11;s:10:"AXYL_00997";i:12;s:39:"Sodium/calcium exchanger family protein";i:13;s:10:"AXYL_00997";i:14;s:11:"Single gene";i:15;s:7:"2972114";i:16;s:10:"AXYL_00997";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1403287-1403461";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1404095-1404875";i:10;s:1:"-";i:11;s:10:"AXYL_01332";i:12;s:38:"Bacterial-like globin family protein 1";i:13;s:10:"AXYL_01332";i:14;s:6:"Operon";i:15;s:6:"761442";i:16;s:21:"AXYL_01332;AXYL_01333";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2741883-2741989";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2742096-2743548";i:10;s:1:"+";i:11;s:10:"AXYL_02582";i:12;s:40:"Sodium:solute symporter family protein 2";i:13;s:10:"AXYL_02582";i:14;s:11:"Single gene";i:15;s:7:"2972623";i:16;s:10:"AXYL_02582";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4603673-4603765";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4603899-4605129";i:10;s:1:"+";i:11;s:5:"dadA4";i:12;s:43:"D-amino acid dehydrogenase small subunit 4 ";i:13;s:10:"AXYL_04304";i:14;s:11:"Single gene";i:15;s:7:"2973184";i:16;s:17:"AXYL_04304(dadA4)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4603767-4603855";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4603899-4605129";i:10;s:1:"+";i:11;s:5:"dadA4";i:12;s:43:"D-amino acid dehydrogenase small subunit 4 ";i:13;s:10:"AXYL_04304";i:14;s:11:"Single gene";i:15;s:7:"2973184";i:16;s:17:"AXYL_04304(dadA4)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"6045885-6046007";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"6044697-6045798";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"AXYL_05636";i:14;s:6:"Operon";i:15;s:6:"762355";i:16;s:33:"AXYL_05635(gcvH);AXYL_05636(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"6046043-6046138";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"6044697-6045798";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"AXYL_05636";i:14;s:6:"Operon";i:15;s:6:"762355";i:16;s:33:"AXYL_05635(gcvH);AXYL_05636(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"6530964-6531069";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"6531134-6533048";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"AXYL_06063";i:14;s:11:"Single gene";i:15;s:7:"2973712";i:16;s:16:"AXYL_06063(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014640.1";i:2;s:30:"Achromobacter xylosoxidans A8 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"6704911-6705045";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6703391-6704810";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"AXYL_06232";i:14;s:11:"Single gene";i:15;s:7:"2973766";i:16;s:16:"AXYL_06232(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
