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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
604366-604465
(+)
SAM
604548-605697 (+)
Ilyop_0535
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Ilyop_0535
Single gene
DOOR ID:
2968372
Ilyop_0535
View Structure
2
758458-758535
(+)
glycine
758700-759675 (+)
Ilyop_0665
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Ilyop_0665
Operon
DOOR ID:
759653
Ilyop_0665,
Ilyop_0666,
Ilyop_0667,
Ilyop_0668,
Ilyop_0669
View Structure
3
1184089-1184188
(-)
purine
1183218-1184007 (-)
Ilyop_1093
Molybdopterin dehydrogenase FAD-binding protein
Ilyop_1093
Operon
DOOR ID:
759733
Ilyop_1091,
Ilyop_1092,
Ilyop_1093,
Ilyop_1094,
Ilyop_1095,
Ilyop_1096
View Structure
4
1191419-1191516
(-)
purine
1189970-1191302 (-)
Ilyop_1101
Uracil-xanthine permease
Ilyop_1101
Single gene
DOOR ID:
2968550
Ilyop_1101
View Structure
5
1282604-1282700
(+)
TPP
1283172-1284453 (+)
Ilyop_1181
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ilyop_1181
Single gene
DOOR ID:
2968587
Ilyop_1181
View Structure
6
1294878-1294966
(-)
SAM
1293685-1294693 (-)
Ilyop_1194
Methionine import ATP-binding protein MetN
Ilyop_1194
Operon
DOOR ID:
759750
Ilyop_1191,
Ilyop_1192,
Ilyop_1193,
Ilyop_1194
View Structure
7
1322627-1322802
(-)
cobalamin
1320900-1322388 (+)
Ilyop_1222
Cobyric acid synthase
Ilyop_1222
Single gene
DOOR ID:
2968597
Ilyop_1222
View Structure
8
1339713-1339829
(+)
FMN
1339904-1340852 (+)
Ilyop_1232
Ilyop_1232
Single gene
DOOR ID:
2968600
Ilyop_1232
View Structure
9
1370818-1370971
(-)
glmS
1368891-1370718 (-)
Ilyop_1255
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Ilyop_1255
Single gene
DOOR ID:
2968604
Ilyop_1255
View Structure
10
1429868-1429986
(-)
MOCO
1428136-1429861 (-)
Ilyop_1309
Aldehyde ferredoxin oxidoreductase
Ilyop_1309
Operon
DOOR ID:
759774
Ilyop_1307,
Ilyop_1308,
Ilyop_1309
View Structure
11
1482080-1482182
(-)
TPP
1481039-1482005 (-)
Ilyop_1357
ABC transporter; periplasmic binding protein; thiB subfamily
Ilyop_1357
Operon
DOOR ID:
759782
Ilyop_1356,
Ilyop_1357
View Structure
12
1739098-1739210
(-)
TPP
1738359-1738959 (-)
Ilyop_1618
YKOF domain protein
Ilyop_1618
Single gene
DOOR ID:
2968709
Ilyop_1618
View Structure
13
1749673-1749753
(+)
SAM
1749850-1751128 (+)
Ilyop_1629
O-acetylhomoserine sulfhydrolase (9)
Ilyop_1629
Single gene
DOOR ID:
2968717
Ilyop_1629
View Structure
14
1832330-1832507
(+)
lysine
1832686-1834417 (+)
Ilyop_1708
Transporter; NhaC family
Ilyop_1708
Single gene
DOOR ID:
2968750
Ilyop_1708
View Structure
Genome:
Ilyobacter polytropus DSM 2926
(
NC_014632.1
);
Phylum:
Fusobacteriia
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:13:"604366-604465";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"604548-605697";i:10;s:1:"+";i:11;s:10:"Ilyop_0535";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"Ilyop_0535";i:14;s:11:"Single gene";i:15;s:7:"2968372";i:16;s:10:"Ilyop_0535";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:13:"758458-758535";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"758700-759675";i:10;s:1:"+";i:11;s:10:"Ilyop_0665";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:10:"Ilyop_0665";i:14;s:6:"Operon";i:15;s:6:"759653";i:16;s:54:"Ilyop_0665;Ilyop_0666;Ilyop_0667;Ilyop_0668;Ilyop_0669";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1184089-1184188";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1183218-1184007";i:10;s:1:"-";i:11;s:10:"Ilyop_1093";i:12;s:47:"Molybdopterin dehydrogenase FAD-binding protein";i:13;s:10:"Ilyop_1093";i:14;s:6:"Operon";i:15;s:6:"759733";i:16;s:65:"Ilyop_1091;Ilyop_1092;Ilyop_1093;Ilyop_1094;Ilyop_1095;Ilyop_1096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1191419-1191516";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1189970-1191302";i:10;s:1:"-";i:11;s:10:"Ilyop_1101";i:12;s:24:"Uracil-xanthine permease";i:13;s:10:"Ilyop_1101";i:14;s:11:"Single gene";i:15;s:7:"2968550";i:16;s:10:"Ilyop_1101";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1282604-1282700";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1283172-1284453";i:10;s:1:"+";i:11;s:10:"Ilyop_1181";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Ilyop_1181";i:14;s:11:"Single gene";i:15;s:7:"2968587";i:16;s:10:"Ilyop_1181";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1294878-1294966";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1293685-1294693";i:10;s:1:"-";i:11;s:10:"Ilyop_1194";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:10:"Ilyop_1194";i:14;s:6:"Operon";i:15;s:6:"759750";i:16;s:43:"Ilyop_1191;Ilyop_1192;Ilyop_1193;Ilyop_1194";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1322627-1322802";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1320900-1322388";i:10;s:1:"+";i:11;s:10:"Ilyop_1222";i:12;s:21:"Cobyric acid synthase";i:13;s:10:"Ilyop_1222";i:14;s:11:"Single gene";i:15;s:7:"2968597";i:16;s:10:"Ilyop_1222";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1339713-1339829";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1339904-1340852";i:10;s:1:"+";i:11;s:10:"Ilyop_1232";i:12;s:0:"";i:13;s:10:"Ilyop_1232";i:14;s:11:"Single gene";i:15;s:7:"2968600";i:16;s:10:"Ilyop_1232";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1370818-1370971";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1368891-1370718";i:10;s:1:"-";i:11;s:10:"Ilyop_1255";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Ilyop_1255";i:14;s:11:"Single gene";i:15;s:7:"2968604";i:16;s:10:"Ilyop_1255";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1429868-1429986";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1428136-1429861";i:10;s:1:"-";i:11;s:10:"Ilyop_1309";i:12;s:35:"Aldehyde ferredoxin oxidoreductase ";i:13;s:10:"Ilyop_1309";i:14;s:6:"Operon";i:15;s:6:"759774";i:16;s:32:"Ilyop_1307;Ilyop_1308;Ilyop_1309";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1482080-1482182";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1481039-1482005";i:10;s:1:"-";i:11;s:10:"Ilyop_1357";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:10:"Ilyop_1357";i:14;s:6:"Operon";i:15;s:6:"759782";i:16;s:21:"Ilyop_1356;Ilyop_1357";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1739098-1739210";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1738359-1738959";i:10;s:1:"-";i:11;s:10:"Ilyop_1618";i:12;s:19:"YKOF domain protein";i:13;s:10:"Ilyop_1618";i:14;s:11:"Single gene";i:15;s:7:"2968709";i:16;s:10:"Ilyop_1618";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1749673-1749753";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1749850-1751128";i:10;s:1:"+";i:11;s:10:"Ilyop_1629";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:10:"Ilyop_1629";i:14;s:11:"Single gene";i:15;s:7:"2968717";i:16;s:10:"Ilyop_1629";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014632.1";i:2;s:31:"Ilyobacter polytropus DSM 2926 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1832330-1832507";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1832686-1834417";i:10;s:1:"+";i:11;s:10:"Ilyop_1708";i:12;s:24:"Transporter; NhaC family";i:13;s:10:"Ilyop_1708";i:14;s:11:"Single gene";i:15;s:7:"2968750";i:16;s:10:"Ilyop_1708";i:17;s:0:"";i:18;s:15:"View Structure ";}}