Genome: Eubacterium limosum KIST612 (NC_014624.2); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 453707-453857 (+)glmS453876-455703 (+)ELI_0478

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		ELI_0478Single gene

DOOR ID: 2966028		ELI_0478 View Structure
2 732628-732803 (+)cobalamin732907-733858 (+)ELI_0752

Periplasmic binding protein		ELI_0752Operon

DOOR ID: 757905		ELI_0752,
ELI_0753,
ELI_0754,
ELI_0755,
ELI_0756,
ELI_0757,
ELI_0758,
ELI_0759,
ELI_0760,
ELI_0761		 View Structure
3 747964-748152 (+)cobalamin748316-749573 (+)ELI_0769

Glutamyl-tRNA reductase (GluTR) (0)		ELI_0769Operon

DOOR ID: 757908		ELI_0769,
ELI_0770,
ELI_0771,
ELI_0772,
ELI_0773,
ELI_0774		 View Structure
4 942629-942759 (+)FMN942847-943411 (+)ELI_0978

Riboflavin transporter		ELI_0978Single gene

DOOR ID: 2966161		ELI_0978 View Structure
5 1003342-1003422 (+)c-di-GMP-I1003444-1005568 (+)ELI_1058

GGDEF domain-containing protein		ELI_1058single gene

DOOR ID: 2966180		ELI_1058 View Structure
6 1035036-1035211 (-)cobalamin1034317-1034923 (-)ELI_1083

ELI_1083Operon

DOOR ID: 757974		ELI_1082,
ELI_1083		 View Structure
7 1177857-1177974 (-)MOCO1176894-1177767 (-)ELI_1211

Extracellular tungstate binding protein		ELI_1211Operon

DOOR ID: 757996		ELI_1208,
ELI_1209,
ELI_1210,
ELI_1211,
ELI_1212		 View Structure
8 1317365-1317459 (+)glycine1317503-1318946 (+)ELI_1379

ELI_1379Single gene

DOOR ID: 2966272		ELI_1379 View Structure
9 1414357-1414533 (+)cobalamin1414696-1415779 (+)ELI_1506

Iron(III) dicitrate-binding protein		ELI_1506Operon

DOOR ID: 758053		ELI_1506,
ELI_1507,
ELI_1508		 View Structure
10 1548359-1548534 (-)cobalamin1547225-1548263 (-)ELI_1635

Alcohol dehydrogenase GroES domain protein		ELI_1635Operon

DOOR ID: 758080		ELI_1633,
ELI_1634,
ELI_1635		 View Structure
11 1616838-1616916 (-)ZMP-ZTP1614828-1615392 (-)ELI_1713

ELI_1713Single gene

DOOR ID: 2966360		ELI_1713 View Structure
12 1619213-1619390 (+)cobalamin1619470-1620340 (+)ELI_1717

Putative nitrogenase subunit nifH		ELI_1717Operon

DOOR ID: 758096		ELI_1717,
ELI_1718,
ELI_1719,
ELI_1720,
ELI_1721		 View Structure
13 1647583-1647696 (+)MOCO1647840-1648296 (+)ELI_1751

ELI_1751Operon

DOOR ID: 758103		ELI_1749,
ELI_1750,
ELI_1751,
ELI_1752		 View Structure
14 2056081-2056125 (+)PreQ12056207-2057191 (+)ELI_2205

Nucleoside hydrolase		ELI_2205Operon

DOOR ID: 758209		ELI_2205,
ELI_2206		 View Structure
15 2075559-2075667 (+)TPP2075715-2076228 (+)ELI_2224

ThiW protein		ELI_2224Single gene

DOOR ID: 2966482		ELI_2224 View Structure
16 2133462-2133576 (-)FMN2132212-2133316 (-)ELI_2295

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		ELI_2295Operon

DOOR ID: 758229		ELI_2292,
ELI_2293,
ELI_2294,
ELI_2295,
ELI_2296		 View Structure
17 2522492-2522670 (+)cobalamin2523066-2523825 (-)ELI_2721

ELI_2721Operon

DOOR ID: 758321		ELI_2721,
ELI_2722		 View Structure
18 2529204-2529291 (-)c-di-GMP-I2523835-2529073 (-)ELI_2722

Fibronectin type III domain protein		ELI_2722operon

DOOR ID: 758321		ELI_2721,
ELI_2722		 View Structure
19 2605909-2606044 (+)MOCO2607110-2608148 (+)ELI_2808

Transport system permease protein		ELI_2808Operon

DOOR ID: 758341		ELI_2807,
ELI_2808,
ELI_2809,
ELI_2810		 View Structure
20 2642239-2642356 (-)cobalamin2641337-2642090 (-)ELI_2837

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		ELI_2837Operon

DOOR ID: 758350		ELI_2836,
ELI_2837		 View Structure
21 2687103-2687227 (+)ydaO-yuaA2687319-2688549 (+)ELI_2896

Peptidase M29 aminopeptidase II		ELI_2896Operon

DOOR ID: 758362		ELI_2894,
ELI_2895,
ELI_2896		 View Structure
22 2754616-2754774 (-)ykoK2754393-2754510 (-)ELI_2982

ELI_2982Operon

DOOR ID: 758382		ELI_2981,
ELI_2982		 View Structure
23 2826960-2827055 (-)SAM2825659-2826838 (-)ELI_3062

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		ELI_3062Single gene

DOOR ID: 2966696		ELI_3062 View Structure
24 3015495-3015665 (+)lysine3015806-3016805 (+)ELI_3254

Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)		ELI_3254Operon

DOOR ID: 758436		ELI_3253,
ELI_3254,
ELI_3255,
ELI_3256,
ELI_3257,
ELI_3258,
ELI_3259		 View Structure
25 3118819-3118919 (-)TPP3117426-3118761 (-)ELI_3355

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		ELI_3355Operon

DOOR ID: 758459		ELI_3354,
ELI_3355		 View Structure
26 3124140-3124231 (+)THF3124357-3125113 (+)ELI_3365

ELI_3365Single gene

DOOR ID: 2966757		ELI_3365 View Structure
27 3125211-3125303 (+)THF3125324-3125972 (+)ELI_3366

GTP cyclohydrolase 1 (6) (GTP cyclohydrolase I) (GTP-CH-I)		ELI_3366Operon

DOOR ID: 758462		ELI_3366,
ELI_3367,
ELI_3368,
ELI_3369		 View Structure
28 3394381-3394484 (-)SAM3392757-3393159 (-)ELI_3643

4Fe-4S ferredoxin		ELI_3643Operon

DOOR ID: 758516		ELI_3641,
ELI_3642,
ELI_3643,
ELI_3644,
ELI_3645,
ELI_3646		 View Structure
29 3662457-3662586 (+)cobalamin3662751-3663504 (+)ELI_3913

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		ELI_3913Operon

DOOR ID: 758570		ELI_3913,
ELI_3914		 View Structure
30 3687322-3687439 (-)MOCO3686145-3687243 (-)ELI_3939

Periplasmic binding protein		ELI_3939Single gene

DOOR ID: 2966914		ELI_3939 View Structure
31 3690273-3690396 (-)MOCO3690151-3690238 (-)ELI_3945

ELI_3945Operon

DOOR ID: 758574		ELI_3945,
ELI_3946		 View Structure
32 3698397-3698455 (+)fluoride3698499-3698883 (+)ELI_3955

Putative fluoride ion transporter CrcB		ELI_3955Single gene

DOOR ID: 2966924		ELI_3955 View Structure
33 3715805-3715985 (-)cobalamin3714676-3715693 (-)ELI_3972

Putative iron compound ABC transporter		ELI_3972Operon

DOOR ID: 758581		ELI_3970,
ELI_3971,
ELI_3972		 View Structure
34 3866842-3866935 (-)c-di-GMP-I3866133-3866661 (-)ELI_4145

Uncharacterized protein		ELI_4145single gene

DOOR ID: 2966970		ELI_4145 View Structure
35 3938241-3938412 (+)cobalamin3938668-3939952 (+)ELI_4215

Thiamine biosynthesis protein ThiC		ELI_4215Operon

DOOR ID: 758626		ELI_4215,
ELI_4216,
ELI_4217,
ELI_4218,
ELI_4219,
ELI_4220		 View Structure
36 4096380-4096542 (-)cobalamin4095256-4095985 (-)ELI_4367

ELI_4367Operon

DOOR ID: 758657		ELI_4366,
ELI_4367		 View Structure
37 4103531-4103711 (-)cobalamin4103402-4103498 (-)ELI_4375

ELI_4375Operon

DOOR ID: 758659		ELI_4372,
ELI_4373,
ELI_4374,
ELI_4375		 View Structure
38 4287132-4287219 (+)c-di-GMP-I4287308-4287641 (+)ELI_4570

Toxin-antitoxin system		ELI_4570single gene

DOOR ID: 2967112		ELI_4570 View Structure