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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1915927-1916136
(-)
cobalamin
1915035-1915869 (-)
STAUR_1571
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
STAUR_1571
Single gene
DOOR ID:
2963248
STAUR_1571
View Structure
2
1946098-1946308
(-)
cobalamin
1942925-1944485 (-)
aldH
1-pyrroline-5-carboxylate dehydrogenase 1
STAUR_1586
Operon
DOOR ID:
1190548
STAUR_1584,
STAUR_1585,
STAUR_1586
(aldH)
,
STAUR_1587
View Structure
3
2674277-2674495
(-)
cobalamin
2672795-2674148 (-)
STAUR_2172
Conserved uncharacterized protein
STAUR_2172
Operon
DOOR ID:
1190671
STAUR_2170,
STAUR_2171,
STAUR_2172
View Structure
4
5734106-5734214
(-)
TPP
5732192-5734067 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
STAUR_4690
Single gene
DOOR ID:
2964374
STAUR_4690
(thiC)
View Structure
5
7720690-7720757
(+)
SAH
7720827-7722243 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
STAUR_6282
Single gene
DOOR ID:
2964938
STAUR_6282
(ahcY)
View Structure
6
9064377-9064511
(-)
cobalamin
9062305-9064198 (-)
STAUR_7394
TonB-dependent receptor
STAUR_7394
Operon
DOOR ID:
1191772
STAUR_7389,
STAUR_7390,
STAUR_7391,
STAUR_7392,
STAUR_7393,
STAUR_7394
View Structure
Genome:
Stigmatella aurantiaca DW4/3-1
(
NC_014623.1
);
Phylum:
delta/epsilon subdivisions
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