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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
273226-273409
(-)
ykoK
272155-273169 (-)
Entcl_0246
MgtE integral membrane region
Entcl_0246
Single gene
DOOR ID:
2958664
Entcl_0246
View Structure
2
741750-741899
(+)
FMN
742005-742659 (+)
Entcl_0709
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Entcl_0709
Single gene
DOOR ID:
2958797
Entcl_0709
View Structure
3
1693341-1693437
(+)
TPP
1693474-1694254 (+)
Entcl_1595
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Entcl_1595
Operon
DOOR ID:
755804
Entcl_1595,
Entcl_1596,
Entcl_1597
View Structure
4
1887467-1887642
(+)
cobalamin
1887738-1889118 (+)
Entcl_1762
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
Entcl_1762
Operon
DOOR ID:
755835
Entcl_1762,
Entcl_1763,
Entcl_1764,
Entcl_1765,
Entcl_1766,
Entcl_1767,
Entcl_1768,
Entcl_1769,
Entcl_1770,
Entcl_1771,
Entcl_1772,
Entcl_1773,
Entcl_1774,
Entcl_1775,
Entcl_1776,
Entcl_1777,
Entcl_1778,
Entcl_1779,
Entcl_1780,
Entcl_1781,
Entcl_1782
View Structure
5
2084544-2084734
(-)
yybP-ykoY
2083975-2084539 (-)
Entcl_1972
Putative manganese efflux pump MntP
Entcl_1972
Single gene
DOOR ID:
2959175
Entcl_1972
View Structure
6
3239336-3239476
(-)
MOCO
3237819-3238332 (-)
Entcl_3039
Molybdenum cofactor biosynthesis protein B
Entcl_3039
Operon
DOOR ID:
756060
Entcl_3035,
Entcl_3036,
Entcl_3037,
Entcl_3038,
Entcl_3039,
Entcl_3040
View Structure
7
3926944-3927049
(+)
TPP
3927079-3928063 (+)
Entcl_3657
Thiamine ABC transporter; periplasmic binding protein
Entcl_3657
Operon
DOOR ID:
756196
Entcl_3657,
Entcl_3658,
Entcl_3659
View Structure
8
4206644-4206762
(-)
Mg sensor
4203834-4206543 (-)
Entcl_3909
Magnesium-translocating P-type ATPase
Entcl_3909
Single gene
DOOR ID:
2959978
Entcl_3909
View Structure
9
4304524-4304572
(-)
mini-ykkC
4302828-4304163 (+)
Entcl_4002
Entcl_4002
Single gene
DOOR ID:
2960016
Entcl_4002
View Structure
10
4493881-4493981
(+)
TPP
4494061-4495957 (+)
Entcl_4165
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Entcl_4165
Operon
DOOR ID:
756294
Entcl_4165,
Entcl_4166,
Entcl_4167,
Entcl_4168,
Entcl_4169,
Entcl_4170
View Structure
11
4629133-4629315
(-)
cobalamin
4627222-4629067 (-)
Entcl_4274
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Entcl_4274
Operon
DOOR ID:
756317
Entcl_4273,
Entcl_4274
View Structure
12
4648387-4648489
(+)
glycine
4649020-4651522 (+)
Entcl_4292
Phosphoenolpyruvate-protein phosphotransferase
Entcl_4292
Operon
DOOR ID:
756322
Entcl_4292,
Entcl_4293,
Entcl_4294
View Structure
Genome:
Enterobacter cloacae SCF1
(
NC_014618.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"273226-273409";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"272155-273169";i:10;s:1:"-";i:11;s:10:"Entcl_0246";i:12;s:29:"MgtE integral membrane region";i:13;s:10:"Entcl_0246";i:14;s:11:"Single gene";i:15;s:7:"2958664";i:16;s:10:"Entcl_0246";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"741750-741899";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"742005-742659";i:10;s:1:"+";i:11;s:10:"Entcl_0709";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Entcl_0709";i:14;s:11:"Single gene";i:15;s:7:"2958797";i:16;s:10:"Entcl_0709";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1693341-1693437";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1693474-1694254";i:10;s:1:"+";i:11;s:10:"Entcl_1595";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Entcl_1595";i:14;s:6:"Operon";i:15;s:6:"755804";i:16;s:32:"Entcl_1595;Entcl_1596;Entcl_1597";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1887467-1887642";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1887738-1889118";i:10;s:1:"+";i:11;s:10:"Entcl_1762";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"Entcl_1762";i:14;s:6:"Operon";i:15;s:6:"755835";i:16;s:230:"Entcl_1762;Entcl_1763;Entcl_1764;Entcl_1765;Entcl_1766;Entcl_1767;Entcl_1768;Entcl_1769;Entcl_1770;Entcl_1771;Entcl_1772;Entcl_1773;Entcl_1774;Entcl_1775;Entcl_1776;Entcl_1777;Entcl_1778;Entcl_1779;Entcl_1780;Entcl_1781;Entcl_1782";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2084544-2084734";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2083975-2084539";i:10;s:1:"-";i:11;s:10:"Entcl_1972";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Entcl_1972";i:14;s:11:"Single gene";i:15;s:7:"2959175";i:16;s:10:"Entcl_1972";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3239336-3239476";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3237819-3238332";i:10;s:1:"-";i:11;s:10:"Entcl_3039";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Entcl_3039";i:14;s:6:"Operon";i:15;s:6:"756060";i:16;s:65:"Entcl_3035;Entcl_3036;Entcl_3037;Entcl_3038;Entcl_3039;Entcl_3040";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3926944-3927049";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3927079-3928063";i:10;s:1:"+";i:11;s:10:"Entcl_3657";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Entcl_3657";i:14;s:6:"Operon";i:15;s:6:"756196";i:16;s:32:"Entcl_3657;Entcl_3658;Entcl_3659";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4206644-4206762";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4203834-4206543";i:10;s:1:"-";i:11;s:10:"Entcl_3909";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:10:"Entcl_3909";i:14;s:11:"Single gene";i:15;s:7:"2959978";i:16;s:10:"Entcl_3909";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4304524-4304572";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4302828-4304163";i:10;s:1:"+";i:11;s:10:"Entcl_4002";i:12;s:0:"";i:13;s:10:"Entcl_4002";i:14;s:11:"Single gene";i:15;s:7:"2960016";i:16;s:10:"Entcl_4002";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4493881-4493981";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4494061-4495957";i:10;s:1:"+";i:11;s:10:"Entcl_4165";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Entcl_4165";i:14;s:6:"Operon";i:15;s:6:"756294";i:16;s:65:"Entcl_4165;Entcl_4166;Entcl_4167;Entcl_4168;Entcl_4169;Entcl_4170";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4629133-4629315";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4627222-4629067";i:10;s:1:"-";i:11;s:10:"Entcl_4274";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Entcl_4274";i:14;s:6:"Operon";i:15;s:6:"756317";i:16;s:21:"Entcl_4273;Entcl_4274";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014618.1";i:2;s:26:"Enterobacter cloacae SCF1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4648387-4648489";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4649020-4651522";i:10;s:1:"+";i:11;s:10:"Entcl_4292";i:12;s:46:"Phosphoenolpyruvate-protein phosphotransferase";i:13;s:10:"Entcl_4292";i:14;s:6:"Operon";i:15;s:6:"756322";i:16;s:32:"Entcl_4292;Entcl_4293;Entcl_4294";i:17;s:74:"phosphoenolpyruvate-dependent sugar phosphotransferase system [GO:0009401]";i:18;s:15:"View Structure ";}}