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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
719645-719822
(+)
lysine
719895-721278 (+)
Fbal_0663
Aspartokinase
Fbal_0663
Single gene
DOOR ID:
2948875
Fbal_0663
View Structure
2
739797-739890
(+)
c-di-GMP-I
739941-741309 (+)
Fbal_0676
Chitin-binding domain 3 protein
Fbal_0676
single gene
DOOR ID:
2948883
Fbal_0676
View Structure
3
763608-763718
(-)
yybP-ykoY
762948-763506 (-)
Fbal_0697
Fbal_0697
Single gene
DOOR ID:
2948897
Fbal_0697
View Structure
4
1079072-1079269
(+)
lysine
1079349-1080936 (+)
Fbal_0982
Transporter; NhaC family
Fbal_0982
Single gene
DOOR ID:
2948980
Fbal_0982
View Structure
5
1102867-1102959
(+)
glycine
1103078-1104440 (+)
Fbal_1002
Amino acid carrier protein
Fbal_1002
Operon
DOOR ID:
1189679
Fbal_1002,
Fbal_1003
View Structure
6
1461897-1461956
(-)
SAH
1455733-1459213 (+)
Fbal_1305
RecBCD enzyme subunit RecC (Exonuclease V subunit RecC) (ExoV subunit RecC) (Helicase/nuclease RecBCD subunit RecC)
Fbal_1305
Operon
DOOR ID:
1189739
Fbal_1305,
Fbal_1306,
Fbal_1307
View Structure
7
1776620-1776721
(+)
TPP
1776780-1778913 (+)
Fbal_1596
TonB-dependent receptor
Fbal_1596
Operon
DOOR ID:
1189793
Fbal_1596,
Fbal_1597,
Fbal_1598,
Fbal_1599
View Structure
8
1889391-1889421
(-)
SAH
1887075-1887522 (-)
Fbal_1693
Fbal_1693
Single gene
DOOR ID:
2949260
Fbal_1693
View Structure
9
2279069-2279174
(-)
TPP
2277015-2278956 (-)
Fbal_2034
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Fbal_2034
Operon
DOOR ID:
1189874
Fbal_2029,
Fbal_2030,
Fbal_2031,
Fbal_2032,
Fbal_2033,
Fbal_2034
View Structure
10
2762116-2762199
(-)
c-di-GMP-I
2761322-2762021 (-)
Fbal_2482
Plasmid segregation oscillating ATPase ParF
Fbal_2482
operon
DOOR ID:
1189960
Fbal_2481,
Fbal_2482
View Structure
11
2783819-2783902
(+)
c-di-GMP-I
2783994-2786607 (+)
Fbal_2498
Chitinase family 18
Fbal_2498
single gene
DOOR ID:
2949570
Fbal_2498
View Structure
12
3054493-3054592
(+)
purine
3054666-3056037 (+)
Fbal_2727
Xanthine/uracil/vitamin C permease
Fbal_2727
Operon
DOOR ID:
1190014
Fbal_2727,
Fbal_2728
View Structure
13
4191386-4191527
(+)
MOCO
4192526-4193057 (+)
Fbal_3721
Molybdenum cofactor biosynthesis protein B
Fbal_3721
Operon
DOOR ID:
1190209
Fbal_3720,
Fbal_3721,
Fbal_3722,
Fbal_3723,
Fbal_3724
View Structure
Genome:
Ferrimonas balearica DSM 9799
(
NC_014541.1
);
Phylum:
Gammaproteobacteria
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NhaC family";i:13;s:9:"Fbal_0982";i:14;s:11:"Single gene";i:15;s:7:"2948980";i:16;s:9:"Fbal_0982";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1102867-1102959";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1103078-1104440";i:10;s:1:"+";i:11;s:9:"Fbal_1002";i:12;s:26:"Amino acid carrier protein";i:13;s:9:"Fbal_1002";i:14;s:6:"Operon";i:15;s:7:"1189679";i:16;s:19:"Fbal_1002;Fbal_1003";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1461897-1461956";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1455733-1459213";i:10;s:1:"+";i:11;s:9:"Fbal_1305";i:12;s:116:"RecBCD enzyme subunit RecC (Exonuclease V subunit RecC) (ExoV subunit RecC) (Helicase/nuclease RecBCD subunit RecC)";i:13;s:9:"Fbal_1305";i:14;s:6:"Operon";i:15;s:7:"1189739";i:16;s:29:"Fbal_1305;Fbal_1306;Fbal_1307";i:17;s:68:"double-strand break repair via homologous recombination [GO:0000724]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1776620-1776721";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1776780-1778913";i:10;s:1:"+";i:11;s:9:"Fbal_1596";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Fbal_1596";i:14;s:6:"Operon";i:15;s:7:"1189793";i:16;s:39:"Fbal_1596;Fbal_1597;Fbal_1598;Fbal_1599";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1889391-1889421";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1887075-1887522";i:10;s:1:"-";i:11;s:9:"Fbal_1693";i:12;s:0:"";i:13;s:9:"Fbal_1693";i:14;s:11:"Single gene";i:15;s:7:"2949260";i:16;s:9:"Fbal_1693";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2279069-2279174";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2277015-2278956";i:10;s:1:"-";i:11;s:9:"Fbal_2034";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Fbal_2034";i:14;s:6:"Operon";i:15;s:7:"1189874";i:16;s:59:"Fbal_2029;Fbal_2030;Fbal_2031;Fbal_2032;Fbal_2033;Fbal_2034";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2762116-2762199";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2761322-2762021";i:10;s:1:"-";i:11;s:9:"Fbal_2482";i:12;s:43:"Plasmid segregation oscillating ATPase ParF";i:13;s:9:"Fbal_2482";i:14;s:6:"operon";i:15;s:7:"1189960";i:16;s:19:"Fbal_2481;Fbal_2482";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2783819-2783902";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2783994-2786607";i:10;s:1:"+";i:11;s:9:"Fbal_2498";i:12;s:19:"Chitinase family 18";i:13;s:9:"Fbal_2498";i:14;s:11:"single gene";i:15;s:7:"2949570";i:16;s:9:"Fbal_2498";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3054493-3054592";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"3054666-3056037";i:10;s:1:"+";i:11;s:9:"Fbal_2727";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:9:"Fbal_2727";i:14;s:6:"Operon";i:15;s:7:"1190014";i:16;s:19:"Fbal_2727;Fbal_2728";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014541.1";i:2;s:30:"Ferrimonas balearica DSM 9799 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4191386-4191527";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"4192526-4193057";i:10;s:1:"+";i:11;s:9:"Fbal_3721";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"Fbal_3721";i:14;s:6:"Operon";i:15;s:7:"1190209";i:16;s:49:"Fbal_3720;Fbal_3721;Fbal_3722;Fbal_3723;Fbal_3724";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}