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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
545160-545268
(+)
ZMP-ZTP
545434-546682 (+)
BC1003_0487
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BC1003_0487
Operon
DOOR ID:
749900
BC1003_0487,
BC1003_0488
View Structure
2
969663-970008
(+)
cobalamin
970096-971959 (+)
BC1003_0857
TonB-dependent receptor
BC1003_0857
Operon
DOOR ID:
749963
BC1003_0857,
BC1003_0858,
BC1003_0859,
BC1003_0860,
BC1003_0861,
BC1003_0862
View Structure
3
1250691-1250809
(-)
TPP
1248627-1250559 (-)
BC1003_1090
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BC1003_1090
Single gene
DOOR ID:
2946428
BC1003_1090
View Structure
4
2769281-2769324
(-)
mini-ykkC
2768939-2769260 (-)
BC1003_2351
BC1003_2351
Single gene
DOOR ID:
2947033
BC1003_2351
View Structure
5
3128304-3128523
(+)
yybP-ykoY
3128532-3129105 (+)
BC1003_2663
BC1003_2663
Single gene
DOOR ID:
2947172
BC1003_2663
View Structure
6
3394004-3394189
(-)
FMN
3393131-3393848 (-)
BC1003_2907
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BC1003_2907
Single gene
DOOR ID:
2947294
BC1003_2907
View Structure
7
3689051-3689174
(-)
TPP
3687697-3688831 (-)
BC1003_3175
FAD dependent oxidoreductase
BC1003_3175
Operon
DOOR ID:
750386
BC1003_3174,
BC1003_3175
View Structure
8
3843813-3843950
(-)
SAH
3842358-3843780 (-)
BC1003_3318
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BC1003_3318
Single gene
DOOR ID:
2947450
BC1003_3318
View Structure
9
3934195-3934379
(-)
yybP-ykoY
3933098-3934109 (-)
BC1003_3406
Sodium/calcium exchanger membrane region
BC1003_3406
Single gene
DOOR ID:
2947469
BC1003_3406
View Structure
10
3950704-3950805
(+)
glycine
3951096-3952215 (+)
BC1003_3424
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1003_3424
Operon
DOOR ID:
750434
BC1003_3424,
BC1003_3425,
BC1003_3426
View Structure
11
3950858-3951017
(+)
glycine
3951096-3952215 (+)
BC1003_3424
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1003_3424
Operon
DOOR ID:
750434
BC1003_3424,
BC1003_3425,
BC1003_3426
View Structure
Genome:
Burkholderia sp. CCGE1003 chromosome I
(
NC_014539.1
);
Phylum:
Betaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"545160-545268";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"545434-546682";i:10;s:1:"+";i:11;s:11:"BC1003_0487";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"BC1003_0487";i:14;s:6:"Operon";i:15;s:6:"749900";i:16;s:23:"BC1003_0487;BC1003_0488";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"969663-970008";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"970096-971959";i:10;s:1:"+";i:11;s:11:"BC1003_0857";i:12;s:23:"TonB-dependent receptor";i:13;s:11:"BC1003_0857";i:14;s:6:"Operon";i:15;s:6:"749963";i:16;s:71:"BC1003_0857;BC1003_0858;BC1003_0859;BC1003_0860;BC1003_0861;BC1003_0862";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1250691-1250809";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1248627-1250559";i:10;s:1:"-";i:11;s:11:"BC1003_1090";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"BC1003_1090";i:14;s:11:"Single gene";i:15;s:7:"2946428";i:16;s:11:"BC1003_1090";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2769281-2769324";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2768939-2769260";i:10;s:1:"-";i:11;s:11:"BC1003_2351";i:12;s:0:"";i:13;s:11:"BC1003_2351";i:14;s:11:"Single gene";i:15;s:7:"2947033";i:16;s:11:"BC1003_2351";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3128304-3128523";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3128532-3129105";i:10;s:1:"+";i:11;s:11:"BC1003_2663";i:12;s:0:"";i:13;s:11:"BC1003_2663";i:14;s:11:"Single gene";i:15;s:7:"2947172";i:16;s:11:"BC1003_2663";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3394004-3394189";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3393131-3393848";i:10;s:1:"-";i:11;s:11:"BC1003_2907";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"BC1003_2907";i:14;s:11:"Single gene";i:15;s:7:"2947294";i:16;s:11:"BC1003_2907";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3689051-3689174";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3687697-3688831";i:10;s:1:"-";i:11;s:11:"BC1003_3175";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:11:"BC1003_3175";i:14;s:6:"Operon";i:15;s:6:"750386";i:16;s:23:"BC1003_3174;BC1003_3175";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3843813-3843950";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3842358-3843780";i:10;s:1:"-";i:11;s:11:"BC1003_3318";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"BC1003_3318";i:14;s:11:"Single gene";i:15;s:7:"2947450";i:16;s:11:"BC1003_3318";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3934195-3934379";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3933098-3934109";i:10;s:1:"-";i:11;s:11:"BC1003_3406";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:11:"BC1003_3406";i:14;s:11:"Single gene";i:15;s:7:"2947469";i:16;s:11:"BC1003_3406";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3950704-3950805";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3951096-3952215";i:10;s:1:"+";i:11;s:11:"BC1003_3424";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1003_3424";i:14;s:6:"Operon";i:15;s:6:"750434";i:16;s:35:"BC1003_3424;BC1003_3425;BC1003_3426";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014539.1";i:2;s:38:"Burkholderia sp. CCGE1003 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3950858-3951017";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3951096-3952215";i:10;s:1:"+";i:11;s:11:"BC1003_3424";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1003_3424";i:14;s:6:"Operon";i:15;s:6:"750434";i:16;s:35:"BC1003_3424;BC1003_3425;BC1003_3426";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}
