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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
227567-227746
(-)
FMN
226978-227461 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
HELO_1195
Single gene
DOOR ID:
2942772
HELO_1195
(ribH)
View Structure
2
599531-599639
(+)
TPP
601137-602826 (+)
ilvD
Dihydroxy-acid dehydratase (DAD)
HELO_1522
Single gene
DOOR ID:
2942893
HELO_1522
(ilvD)
View Structure
3
948349-948569
(+)
cobalamin
948690-950514 (+)
btuB
TonB-dependent receptor BtuB (Probable substrate cobalamin)
HELO_1822
Operon
DOOR ID:
748032
HELO_1822
(btuB)
,
HELO_1823
View Structure
4
956390-956599
(+)
cobalamin
956722-958462 (+)
bchI
Probable cobaltochelatase subunit ChlD
HELO_1829
Operon
DOOR ID:
748035
HELO_1829
(bchI)
,
HELO_1830
(cobB)
,
HELO_1831
(cobW)
,
HELO_1832
(cobN)
,
HELO_1833
(cobG)
,
HELO_1834
(cobH)
,
HELO_1835
(cobI)
,
HELO_1836
(cobJ)
View Structure
5
1616281-1616454
(-)
yybP-ykoY
1615696-1616272 (-)
yebN
Putative manganese efflux pump MntP
HELO_2404
Single gene
DOOR ID:
2943203
HELO_2404
(yebN)
View Structure
6
2525077-2525218
(+)
TPP
2526388-2528278 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HELO_3148
Single gene
DOOR ID:
2943465
HELO_3148
(thiC)
View Structure
7
2526058-2526313
(+)
TPP
2526388-2528278 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HELO_3148
Single gene
DOOR ID:
2943465
HELO_3148
(thiC)
View Structure
8
3481871-3482055
(-)
FMN
3480540-3481500 (+)
HELO_3965
AEC family transport protein
HELO_3965
Operon
DOOR ID:
748490
HELO_3964
(pcaR)
,
HELO_3965
View Structure
9
3869100-3869200
(+)
TPP
3869233-3870040 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
HELO_4302
Operon
DOOR ID:
748567
HELO_4302
(thiM)
,
HELO_4303
(thiE)
View Structure
Genome:
Halomonas elongata DSM 2581
(
NC_014532.1
);
Phylum:
Gammaproteobacteria
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valine biosynthetic process [GO:0009099]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"948349-948569";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"948690-950514";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:59:"TonB-dependent receptor BtuB (Probable substrate cobalamin)";i:13;s:9:"HELO_1822";i:14;s:6:"Operon";i:15;s:6:"748032";i:16;s:25:"HELO_1822(btuB);HELO_1823";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"956390-956599";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"956722-958462";i:10;s:1:"+";i:11;s:4:"bchI";i:12;s:39:"Probable cobaltochelatase subunit ChlD ";i:13;s:9:"HELO_1829";i:14;s:6:"Operon";i:15;s:6:"748035";i:16;s:127:"HELO_1829(bchI);HELO_1830(cobB);HELO_1831(cobW);HELO_1832(cobN);HELO_1833(cobG);HELO_1834(cobH);HELO_1835(cobI);HELO_1836(cobJ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1616281-1616454";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1615696-1616272";i:10;s:1:"-";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"HELO_2404";i:14;s:11:"Single gene";i:15;s:7:"2943203";i:16;s:15:"HELO_2404(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2525077-2525218";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:15:"2526388-2528278";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"HELO_3148";i:14;s:11:"Single gene";i:15;s:7:"2943465";i:16;s:15:"HELO_3148(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2526058-2526313";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:15:"2526388-2528278";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"HELO_3148";i:14;s:11:"Single gene";i:15;s:7:"2943465";i:16;s:15:"HELO_3148(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3481871-3482055";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3480540-3481500";i:10;s:1:"+";i:11;s:9:"HELO_3965";i:12;s:28:"AEC family transport protein";i:13;s:9:"HELO_3965";i:14;s:6:"Operon";i:15;s:6:"748490";i:16;s:25:"HELO_3964(pcaR);HELO_3965";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014532.1";i:2;s:28:"Halomonas elongata DSM 2581 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3869100-3869200";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3869233-3870040";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"HELO_4302";i:14;s:6:"Operon";i:15;s:6:"748567";i:16;s:31:"HELO_4302(thiM);HELO_4303(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
