Genome: Bacillus subtilis subsp. spizizenii str. W23 (NC_014479.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 189528-189698 (+)glmS189786-191589 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
BSUW23_00920Single gene

DOOR ID: 2930692
BSUW23_00920 (glmS) View Structure
2 472864-473008 (+)ydaO-yuaA473200-475024 (+)ydaO

Putative metabolite transporter
BSUW23_02235Single gene

DOOR ID: 2930800
BSUW23_02235 (ydaO) View Structure
3 489451-489581 (+)ydaO-yuaA489654-490893 (+)nqt

Proton/sodium-glutamate symport protein
BSUW23_02330Single gene

DOOR ID: 2930810
BSUW23_02330 (nqt) View Structure
4 604661-604760 (-)purine603439-604606 (-)pbuE

Purine efflux transporter
BSUW23_02970Single gene

DOOR ID: 2930892
BSUW23_02970 (pbuE) View Structure
5 662726-662827 (+)purine662962-664285 (+)pbuG

Hypoxanthine/guanine permease
BSUW23_03230Single gene

DOOR ID: 2930909
BSUW23_03230 (pbuG) View Structure
6 666671-666772 (+)purine666912-667401 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)

DOOR ID: 742571
BSUW23_03255 (purE),
BSUW23_03260 (purK),
BSUW23_03265 (purB),
BSUW23_03270 (purC),
BSUW23_03275 (purS),
BSUW23_03280 (purQ),
BSUW23_03285 (purL)
View Structure
7 915198-915305 (+)TPP915434-917210 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BSUW23_04435Single gene

DOOR ID: 2931014
BSUW23_04435 (thiC) View Structure
8 1143386-1143503 (-)SAM1141456-1143295 (-)yitJ

Bifunctional homocysteine S-methyltransferase/5;10-methylenetetrahydrofolate reductase protein (0)
BSUW23_05580Single gene

DOOR ID: 2931139
BSUW23_05580 (yitJ) View Structure
9 1200096-1200204 (+)TPP1200285-1200993 (+)tenA

Aminopyrimidine aminohydrolase

DOOR ID: 742664
BSUW23_05890 (tenA),
BSUW23_05895 (tenI),
BSUW23_05900 (thiO),
BSUW23_05905 (thiS),
BSUW23_05910 (thiG),
BSUW23_05915 (thiF),
BSUW23_05920 (thiD)
View Structure
10 1216145-1216270 (+)SAM1216314-1217460 (+)metI

Cystathionine gamma-synthase

DOOR ID: 742668
BSUW23_06010 (metI),
BSUW23_06015 (metC)
View Structure
11 1334908-1335019 (+)ykkC-yxkD1335096-1335435 (+)ykkC

Efflux transporter

DOOR ID: 742691
BSUW23_06705 (ykkC),
BSUW23_06710 (ykkD)
View Structure
12 1345944-1346099 (-)SAM1343527-1345816 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BSUW23_06760Single gene

DOOR ID: 2931219
BSUW23_06760 (metE) View Structure
13 1351945-1352057 (-)TPP1351245-1351848 (-)thiU

Thiamine binding protein

DOOR ID: 742693
BSUW23_06775 (thiX),
BSUW23_06780 (thiW),
BSUW23_06785 (thiV),
BSUW23_06790 (thiU)
View Structure
14 1355821-1355988 (+)ykoK1356219-1357575 (+)mgtE

Magnesium transporter MgtE

DOOR ID: 742695
BSUW23_06825 (mgtE)
View Structure
15 1370952-1371057 (+)yybP-ykoY1372221-1372977 (+)sigI

RNA polymerase sigma factor SigI

DOOR ID: 742698
BSUW23_06900 (sigI),
BSUW23_06905 (rsgI)
View Structure
16 1384911-1385065 (-)SAM1383611-1384805 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)

DOOR ID: 742701
BSUW23_06960 (mtnA),
BSUW23_06965 (mtnK)
View Structure
17 1387258-1387358 (+)SAM1387415-1388654 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)

DOOR ID: 742702
BSUW23_06980 (mtnW),
BSUW23_06985 (mtnX),
BSUW23_06990 (mtnB),
BSUW23_06995 (mtnD)
View Structure
18 1399664-1399708 (+)PreQ11399836-1400496 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)

DOOR ID: 742705
BSUW23_07050 (queC),
BSUW23_07055 (queD),
BSUW23_07060 (queE),
BSUW23_07065 (queF)
View Structure
19 1562619-1562721 (+)TPP1562808-1564089 (+)thiQ

N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase (6)

DOOR ID: 742740
BSUW23_07905 (thiQ),
BSUW23_07910 (ylmC)
View Structure
20 1585366-1585471 (+)SAM1585632-1586334 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)

DOOR ID: 742744
BSUW23_08015 (cysH),
BSUW23_08020 (cysP),
BSUW23_08025 (sat),
BSUW23_08030 (cysC),
BSUW23_08035 (sumT),
BSUW23_08040 (sirB),
BSUW23_08045 (sirC)
View Structure
21 2019652-2019743 (-)SAM2018531-2019533 (-)yoaD

Putative 2-hydroxyacid dehydrogenase

DOOR ID: 742812
BSUW23_09895 (yoaC),
BSUW23_09900 (yoaD)
View Structure
22 2171938-2172037 (-)purine2171261-2171846 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

DOOR ID: 742844
BSUW23_10805 (pbuX),
BSUW23_10810 (xpt)
View Structure
23 2262625-2262759 (-)FMN2261902-2262472 (-)fmnP

Riboflavin transporter
BSUW23_11320Single gene

DOOR ID: 2931555
BSUW23_11320 (fmnP) View Structure
24 2283352-2283496 (-)FMN2282135-2283221 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]

DOOR ID: 742874
BSUW23_11420 (ribH),
BSUW23_11425 (ribA),
BSUW23_11430 (ribE),
BSUW23_11435 (ribD)
View Structure
25 2406245-2406346 (-)glycine2404983-2406072 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)

DOOR ID: 742905
BSUW23_12155 (gcvPB),
BSUW23_12160 (gcvPA),
BSUW23_12165 (gcvT)
View Structure
26 2703847-2704026 (-)lysine2702491-2703721 (-)lysC

BSUW23_13815Single gene

DOOR ID: 2931726
BSUW23_13815 (lysC) View Structure
27 2914150-2914288 (-)SAM2912779-2913982 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
BSUW23_14815Single gene

DOOR ID: 2931804
BSUW23_14815 (metK) View Structure
28 2965543-2965644 (+)TPP2965745-2966324 (+)thiT

Thiamin permease
BSUW23_15045Single gene

DOOR ID: 2931820
BSUW23_15045 (thiT) View Structure
29 2974650-2974798 (+)ydaO-yuaA2974871-2975540 (+)ktrA

Potassium uptake protein

DOOR ID: 743036
View Structure
30 3155075-3155181 (-)SAM3153943-3154969 (-)metN

Methionine import ATP-binding protein MetN

DOOR ID: 743069
BSUW23_16000 (metQ),
BSUW23_16005 (metP),
BSUW23_16010 (metN)
View Structure
31 3195291-3195431 (-)cobalamin3194232-3195186 (-)yvrC

Putative lipoprotein binding vitamin B12

DOOR ID: 743079
BSUW23_16225 (yvqK),
BSUW23_16230 (yvrA),
BSUW23_16235 (yvrB),
BSUW23_16240 (yvrC)
View Structure
32 3212049-3212228 (-)lysine3210535-3211945 (-)lysP

Lysine permease
BSUW23_16330Single gene

DOOR ID: 2931918
BSUW23_16330 (lysP) View Structure
33 3800371-3800473 (-)ykkC-yxkD3799464-3800301 (-)yxkD

Efflux transporter
BSUW23_19275Single gene

DOOR ID: 2932133
BSUW23_19275 (yxkD) View Structure
34 3805763-3805869 (+)SAM3805952-3807086 (+)yxjH

Putative methyl-tetrahydrofolate methyltransferase
BSUW23_19315Single gene

DOOR ID: 2932139
BSUW23_19315 (yxjH) View Structure
35 3807155-3807261 (+)SAM3807338-3808475 (+)yxjG

Putative methyltetrahydrofolate methyltransferase
BSUW23_19320Single gene

DOOR ID: 2932140
BSUW23_19320 (yxjG) View Structure
36 3813525-3813626 (+)purine3813753-3814947 (+)yxjA

Nucleoside permease
BSUW23_19355Single gene

DOOR ID: 2932141
BSUW23_19355 (yxjA) View Structure