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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
467258-467402
(-)
FMN
466044-467145 (-)
PB2503_02697
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
PB2503_02697
Operon
DOOR ID:
740647
PB2503_02677,
PB2503_02682,
PB2503_02687,
PB2503_02692,
PB2503_02697
View Structure
2
1311422-1311525
(+)
glycine
1311676-1312840 (+)
PB2503_06737
Glycine cleavage system T protein
PB2503_06737
Operon
DOOR ID:
740820
PB2503_06737,
PB2503_06742,
PB2503_06747,
PB2503_06752
View Structure
3
1377384-1377484
(+)
TPP
1377557-1378340 (+)
PB2503_07017
PB2503_07017
Operon
DOOR ID:
740828
PB2503_07017,
PB2503_07022
View Structure
4
2306337-2306524
(-)
cobalamin
2304344-2306189 (-)
PB2503_11419
Putative TonB dependent Vitamin B12 outer membrane receptor
PB2503_11419
Single gene
DOOR ID:
2928440
PB2503_11419
View Structure
Genome:
Parvularcula bermudensis HTCC2503
(
NC_014414.1
);
Phylum:
Alphaproteobacteria
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