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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
357007-357231
(+)
cobalamin
357377-359396 (+)
Galf_0312
TonB-dependent receptor
Galf_0312
Single gene
DOOR ID:
2925812
Galf_0312
View Structure
2
823426-823537
(+)
ykkC-yxkD
823665-824496 (+)
Galf_0777
Binding-protein-dependent transport systems inner membrane component
Galf_0777
Operon
DOOR ID:
739500
Galf_0777,
Galf_0778,
Galf_0779,
Galf_0780,
Galf_0781,
Galf_0782,
Galf_0783
View Structure
3
826767-826811
(+)
mini-ykkC
826825-830452 (+)
Galf_0781
Galf_0781
Operon
DOOR ID:
739500
Galf_0777,
Galf_0778,
Galf_0779,
Galf_0780,
Galf_0781,
Galf_0782,
Galf_0783
View Structure
4
2852097-2852178
(+)
SAH
2852204-2853617 (+)
Galf_2645
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Galf_2645
Single gene
DOOR ID:
2926343
Galf_2645
View Structure
5
3012258-3012344
(+)
glycine
3012509-3013598 (+)
Galf_2804
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Galf_2804
Operon
DOOR ID:
739929
Galf_2804,
Galf_2805,
Galf_2806,
Galf_2807,
Galf_2808,
Galf_2809
View Structure
6
3072687-3072788
(+)
TPP
3072805-3074677 (+)
Galf_2860
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Galf_2860
Operon
DOOR ID:
739939
Galf_2860,
Galf_2861,
Galf_2862
View Structure
Genome:
Gallionella capsiferriformans ES-2
(
NC_014394.1
);
Phylum:
Betaproteobacteria
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