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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
116853-116987
(+)
ydaO-yuaA
117000-118032 (+)
Micau_0113
NLP/P60 protein
Micau_0113
Single gene
DOOR ID:
2920938
Micau_0113
View Structure
2
366810-366903
(+)
cobalamin
367010-367943 (+)
Micau_0365
Periplasmic binding protein
Micau_0365
Operon
DOOR ID:
1187286
Micau_0367,
Micau_0366,
Micau_0365
View Structure
3
576591-576722
(-)
ydaO-yuaA
575558-576587 (-)
Micau_0571
Micau_0571
Single gene
DOOR ID:
2921120
Micau_0571
View Structure
4
1561349-1561414
(-)
ykkC-III
1560974-1561289 (-)
Micau_1500
Micau_1500
operon
DOOR ID:
1187544
Micau_1499,
Micau_1500
View Structure
5
2198105-2198247
(+)
ydaO-yuaA
2198450-2199293 (+)
Micau_2078
Micau_2078
Single gene
DOOR ID:
2921683
Micau_2078
View Structure
6
2503446-2503618
(+)
FMN
2503788-2504850 (+)
Micau_2356
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Micau_2356
Operon
DOOR ID:
1187735
Micau_2356,
Micau_2357,
Micau_2358,
Micau_2359,
Micau_2360,
Micau_2361,
Micau_2362,
Micau_2363,
Micau_2364
View Structure
7
2994191-2994406
(-)
cobalamin
2991679-2994076 (-)
Micau_2626
Ribonucleoside-diphosphate reductase
Micau_2626
Operon
DOOR ID:
1187793
Micau_2625,
Micau_2626
View Structure
8
2996734-2996942
(-)
cobalamin
2996090-2996603 (-)
Micau_2629
Thioesterase superfamily protein
Micau_2629
Operon
DOOR ID:
1187794
Micau_2628,
Micau_2629
View Structure
9
3611578-3611659
(+)
ZMP-ZTP
3611672-3612539 (+)
Micau_3201
Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]
Micau_3201
Single gene
DOOR ID:
2922076
Micau_3201
View Structure
10
3621229-3621319
(-)
glycine
3618332-3621155 (-)
Micau_3209
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Micau_3209
Single gene
DOOR ID:
2922082
Micau_3209
View Structure
11
3765926-3766097
(-)
ydaO-yuaA
3764629-3765079 (-)
Micau_3352
Micau_3352
Single gene
DOOR ID:
2922138
Micau_3352
View Structure
12
3888752-3888841
(+)
ZMP-ZTP
3888859-3890296 (+)
Micau_3465
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Micau_3465
Single gene
DOOR ID:
2922184
Micau_3465
View Structure
13
4027504-4027614
(+)
SAM-IV
4027647-4027773 (+)
Micau_3602
Micau_3602
Operon
DOOR ID:
1187992
Micau_3602,
Micau_3603,
Micau_3604,
Micau_3605
View Structure
14
4462343-4462416
(-)
cobalamin
4460729-4462184 (-)
Micau_3933
Cell wall anchor domain-containing protein
Micau_3933
Operon
DOOR ID:
1188065
Micau_3929,
Micau_3930,
Micau_3931,
Micau_3932,
Micau_3933
View Structure
15
4464191-4464327
(-)
cobalamin
4463051-4464095 (-)
Micau_3935
LPXTG-motif cell wall anchor domain protein
Micau_3935
Operon
DOOR ID:
1188066
Micau_3934,
Micau_3935
View Structure
16
5340142-5340272
(+)
ydaO-yuaA
5340276-5341350 (+)
Micau_4724
Micau_4724
Single gene
DOOR ID:
2922568
Micau_4724
View Structure
17
5448104-5448210
(+)
TPP
5448285-5448876 (+)
Micau_4831
ABC-type thiamin-related transport system; permease component 1; predicted
Micau_4831
Single gene
DOOR ID:
2922605
Micau_4831
View Structure
18
6158019-6158130
(-)
TPP
6156274-6157345 (-)
Micau_5487
Glycine oxidase ThiO
Micau_5487
Operon
DOOR ID:
1188394
Micau_5482,
Micau_5483,
Micau_5484,
Micau_5485,
Micau_5486,
Micau_5487,
Micau_5488
View Structure
19
6405021-6405143
(+)
SAM-IV
6405188-6406451 (+)
Micau_5740
Aminotransferase class V
Micau_5740
Single gene
DOOR ID:
2922953
Micau_5740
View Structure
20
6425287-6425419
(-)
SAM
6423984-6425274 (-)
Micau_5756
Threonine synthase
Micau_5756
Single gene
DOOR ID:
2922961
Micau_5756
View Structure
Genome:
Micromonospora aurantiaca ATCC 27029
(
NC_014391.1
);
Phylum:
Actinobacteria
a:21:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"116853-116987";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"117000-118032";i:10;s:1:"+";i:11;s:10:"Micau_0113";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Micau_0113";i:14;s:11:"Single gene";i:15;s:7:"2920938";i:16;s:10:"Micau_0113";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"366810-366903";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"367010-367943";i:10;s:1:"+";i:11;s:10:"Micau_0365";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Micau_0365";i:14;s:6:"Operon";i:15;s:7:"1187286";i:16;s:32:"Micau_0367;Micau_0366;Micau_0365";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"576591-576722";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"575558-576587";i:10;s:1:"-";i:11;s:10:"Micau_0571";i:12;s:0:"";i:13;s:10:"Micau_0571";i:14;s:11:"Single gene";i:15;s:7:"2921120";i:16;s:10:"Micau_0571";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1561349-1561414";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1560974-1561289";i:10;s:1:"-";i:11;s:10:"Micau_1500";i:12;s:0:"";i:13;s:10:"Micau_1500";i:14;s:6:"operon";i:15;s:7:"1187544";i:16;s:21:"Micau_1499;Micau_1500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2198105-2198247";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2198450-2199293";i:10;s:1:"+";i:11;s:10:"Micau_2078";i:12;s:0:"";i:13;s:10:"Micau_2078";i:14;s:11:"Single gene";i:15;s:7:"2921683";i:16;s:10:"Micau_2078";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2503446-2503618";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2503788-2504850";i:10;s:1:"+";i:11;s:10:"Micau_2356";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Micau_2356";i:14;s:6:"Operon";i:15;s:7:"1187735";i:16;s:98:"Micau_2356;Micau_2357;Micau_2358;Micau_2359;Micau_2360;Micau_2361;Micau_2362;Micau_2363;Micau_2364";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2994191-2994406";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2991679-2994076";i:10;s:1:"-";i:11;s:10:"Micau_2626";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:10:"Micau_2626";i:14;s:6:"Operon";i:15;s:7:"1187793";i:16;s:21:"Micau_2625;Micau_2626";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2996734-2996942";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2996090-2996603";i:10;s:1:"-";i:11;s:10:"Micau_2629";i:12;s:32:"Thioesterase superfamily protein";i:13;s:10:"Micau_2629";i:14;s:6:"Operon";i:15;s:7:"1187794";i:16;s:21:"Micau_2628;Micau_2629";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3611578-3611659";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3611672-3612539";i:10;s:1:"+";i:11;s:10:"Micau_3201";i:12;s:78:"Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]";i:13;s:10:"Micau_3201";i:14;s:11:"Single gene";i:15;s:7:"2922076";i:16;s:10:"Micau_3201";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3621229-3621319";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3618332-3621155";i:10;s:1:"-";i:11;s:10:"Micau_3209";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Micau_3209";i:14;s:11:"Single gene";i:15;s:7:"2922082";i:16;s:10:"Micau_3209";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3765926-3766097";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3764629-3765079";i:10;s:1:"-";i:11;s:10:"Micau_3352";i:12;s:0:"";i:13;s:10:"Micau_3352";i:14;s:11:"Single gene";i:15;s:7:"2922138";i:16;s:10:"Micau_3352";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3888752-3888841";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3888859-3890296";i:10;s:1:"+";i:11;s:10:"Micau_3465";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"Micau_3465";i:14;s:11:"Single gene";i:15;s:7:"2922184";i:16;s:10:"Micau_3465";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4027504-4027614";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4027647-4027773";i:10;s:1:"+";i:11;s:10:"Micau_3602";i:12;s:0:"";i:13;s:10:"Micau_3602";i:14;s:6:"Operon";i:15;s:7:"1187992";i:16;s:43:"Micau_3602;Micau_3603;Micau_3604;Micau_3605";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4462343-4462416";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4460729-4462184";i:10;s:1:"-";i:11;s:10:"Micau_3933";i:12;s:42:"Cell wall anchor domain-containing protein";i:13;s:10:"Micau_3933";i:14;s:6:"Operon";i:15;s:7:"1188065";i:16;s:54:"Micau_3929;Micau_3930;Micau_3931;Micau_3932;Micau_3933";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4464191-4464327";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4463051-4464095";i:10;s:1:"-";i:11;s:10:"Micau_3935";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:10:"Micau_3935";i:14;s:6:"Operon";i:15;s:7:"1188066";i:16;s:21:"Micau_3934;Micau_3935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5340142-5340272";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5340276-5341350";i:10;s:1:"+";i:11;s:10:"Micau_4724";i:12;s:0:"";i:13;s:10:"Micau_4724";i:14;s:11:"Single gene";i:15;s:7:"2922568";i:16;s:10:"Micau_4724";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5448104-5448210";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5448285-5448876";i:10;s:1:"+";i:11;s:10:"Micau_4831";i:12;s:74:"ABC-type thiamin-related transport system; permease component 1; predicted";i:13;s:10:"Micau_4831";i:14;s:11:"Single gene";i:15;s:7:"2922605";i:16;s:10:"Micau_4831";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6158019-6158130";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"6156274-6157345";i:10;s:1:"-";i:11;s:10:"Micau_5487";i:12;s:20:"Glycine oxidase ThiO";i:13;s:10:"Micau_5487";i:14;s:6:"Operon";i:15;s:7:"1188394";i:16;s:76:"Micau_5482;Micau_5483;Micau_5484;Micau_5485;Micau_5486;Micau_5487;Micau_5488";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6405021-6405143";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"6405188-6406451";i:10;s:1:"+";i:11;s:10:"Micau_5740";i:12;s:24:"Aminotransferase class V";i:13;s:10:"Micau_5740";i:14;s:11:"Single gene";i:15;s:7:"2922953";i:16;s:10:"Micau_5740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_014391.1";i:2;s:37:"Micromonospora aurantiaca ATCC 27029 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6425287-6425419";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"6423984-6425274";i:10;s:1:"-";i:11;s:10:"Micau_5756";i:12;s:18:"Threonine synthase";i:13;s:10:"Micau_5756";i:14;s:11:"Single gene";i:15;s:7:"2922961";i:16;s:10:"Micau_5756";i:17;s:0:"";i:18;s:15:"View Structure ";}}