Genome: Thermosediminibacter oceani DSM 16646 (NC_014377.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 19355-19461 (-)TPP18474-19278 (-)Toce_0021

Phosphomethylpyrimidine kinase 		Toce_0021Operon

DOOR ID: 736288		Toce_0020,
Toce_0021		 View Structure
2 151926-152103 (-)cobalamin150786-151842 (-)Toce_0158

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Toce_0158Single gene

DOOR ID: 2918672		Toce_0158 View Structure
3 225246-225417 (+)ydaO-yuaA225509-226643 (+)Toce_0231

NAD/NADP octopine/nopaline dehydrogenase		Toce_0231Operon

DOOR ID: 736324		Toce_0231,
Toce_0232		 View Structure
4 301837-302020 (+)cobalamin302134-302869 (+)Toce_0304

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Toce_0304Operon

DOOR ID: 736341		Toce_0304,
Toce_0305,
Toce_0306,
Toce_0307,
Toce_0308,
Toce_0309,
Toce_0310,
Toce_0311,
Toce_0312,
Toce_0313,
Toce_0314,
Toce_0315,
Toce_0316,
Toce_0317,
Toce_0318,
Toce_0319,
Toce_0320,
Toce_0321,
Toce_0322,
Toce_0323		 View Structure
5 345140-345258 (+)cobalamin345499-348913 (+)Toce_0347

S-layer domain protein		Toce_0347Single gene

DOOR ID: 2918730		Toce_0347 View Structure
6 442319-442379 (-)fluoride441853-442255 (-)Toce_0445

Putative fluoride ion transporter CrcB		Toce_0445Operon

DOOR ID: 736366		Toce_0444,
Toce_0445		 View Structure
7 472131-472224 (-)c-di-GMP-I471550-472027 (-)Toce_0470

CheW protein		Toce_0470operon

DOOR ID: 736372		Toce_0469,
Toce_0470		 View Structure
8 607990-608162 (+)ydaO-yuaA608235-609732 (+)Toce_0605

Asparagine synthase (Glutamine-hydrolyzing)		Toce_0605Single gene

DOOR ID: 2918788		Toce_0605 View Structure
9 643299-643403 (+)TPP643528-644326 (+)Toce_0642

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Toce_0642Single gene

DOOR ID: 2918803		Toce_0642 View Structure
10 866146-866244 (+)ykkC-yxkD866587-867472 (+)Toce_0873

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Toce_0873Single gene

DOOR ID: 2918853		Toce_0873 View Structure
11 1110600-1110789 (+)lysine1110920-1112249 (+)Toce_1137

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Toce_1137Single gene

DOOR ID: 2918892		Toce_1137 View Structure
12 1393268-1393442 (-)cobalamin1392216-1393167 (-)Toce_1426

Periplasmic binding protein		Toce_1426Operon

DOOR ID: 736562		Toce_1421,
Toce_1422,
Toce_1423,
Toce_1424,
Toce_1425,
Toce_1426		 View Structure
13 1477193-1477295 (-)purine1476612-1477116 (-)Toce_1506

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Toce_1506Operon

DOOR ID: 736578		Toce_1505,
Toce_1506		 View Structure
14 1601175-1601266 (-)glycine1600693-1601008 (-)Toce_1622

Thioredoxin		Toce_1622Operon

DOOR ID: 736602		Toce_1615,
Toce_1616,
Toce_1617,
Toce_1618,
Toce_1619,
Toce_1620,
Toce_1621,
Toce_1622		 View Structure
15 1606665-1606753 (-)c-di-GMP-I1604926-1606450 (-)Toce_1630

Integrase catalytic region		Toce_1630operon

DOOR ID: 736606		Toce_1629,
Toce_1630		 View Structure
16 1683717-1683862 (-)FMN1682525-1683647 (-)Toce_1695

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Toce_1695Operon

DOOR ID: 736619		Toce_1692,
Toce_1693,
Toce_1694,
Toce_1695		 View Structure
17 1712343-1712448 (-)TPP1711751-1712279 (-)Toce_1717

Proton-coupled thiamine transporter YuaJ		Toce_1717Single gene

DOOR ID: 2919040		Toce_1717 View Structure
18 1748891-1748978 (-)c-di-GMP-I1748534-1748801 (-)Toce_1748

Uncharacterized protein		Toce_1748single gene

DOOR ID: 2919053		Toce_1748 View Structure
19 1785219-1785307 (-)c-di-GMP-I1784033-1785122 (-)Toce_1779

Putative sigma54 specific transcriptional regulator		Toce_1779single gene

DOOR ID: 2919064		Toce_1779 View Structure
20 1797347-1797461 (-)SAM1796000-1797275 (-)Toce_1790

O-acetylhomoserine sulfhydrolase (9)		Toce_1790Operon

DOOR ID: 736636		Toce_1789,
Toce_1790		 View Structure
21 1893979-1894082 (-)purine1892581-1893919 (-)Toce_1885

Xanthine/uracil/vitamin C permease		Toce_1885Single gene

DOOR ID: 2919108		Toce_1885 View Structure
22 1904229-1904360 (-)FMN1903544-1904162 (-)Toce_1895

Riboflavin transporter		Toce_1895Single gene

DOOR ID: 2919113		Toce_1895 View Structure
23 1935836-1935923 (-)c-di-GMP-I1934555-1935770 (-)Toce_1928

Type II secretion system F domain protein		Toce_1928single gene

DOOR ID: 2919124		Toce_1928 View Structure
24 1981969-1982127 (-)glmS1980054-1981884 (-)Toce_1967

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Toce_1967Single gene

DOOR ID: 2919139		Toce_1967 View Structure
25 2020746-2020924 (+)cobalamin2021019-2021508 (+)Toce_2005

Toce_2005Operon

DOOR ID: 736675		Toce_2005,
Toce_2006		 View Structure
26 2122056-2122186 (-)ydaO-yuaA2121579-2122053 (-)Toce_2116

Probable endolytic peptidoglycan transglycosylase RlpA 		Toce_2116Single gene

DOOR ID: 2919183		Toce_2116 View Structure
27 2193817-2193933 (+)SAM2194002-2195037 (+)Toce_2190

Methionine import ATP-binding protein MetN 		Toce_2190Operon

DOOR ID: 736710		Toce_2190,
Toce_2191,
Toce_2192,
Toce_2193		 View Structure
28 2216203-2216288 (-)c-di-GMP-I2215403-2215916 (-)Toce_2212

Flavin reductase domain protein FMN-binding protein		Toce_2212single gene

DOOR ID: 2919221		Toce_2212 View Structure