Genome: Clostridium saccharolyticum WM1 (NC_014376.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1052680-1052790 (+)TPP1052857-1053154 (+)Closa_0968

Closa_0968Operon

DOOR ID: 735586		Closa_0968,
Closa_0969		 View Structure
2 1114112-1114207 (+)purine1114357-1115638 (+)Closa_1021

Amidohydrolase		Closa_1021Operon

DOOR ID: 735596		Closa_1021,
Closa_1022		 View Structure
3 1231166-1231288 (+)THF1231336-1231891 (+)Closa_1132

Closa_1132Single gene

DOOR ID: 2917723		Closa_1132 View Structure
4 1237475-1237569 (+)THF1237617-1238154 (+)Closa_1139

Closa_1139Operon

DOOR ID: 735621		Closa_1139,
Closa_1140		 View Structure
5 1473065-1473181 (-)FMN1472303-1472981 (-)Closa_1359

Riboflavin transporter		Closa_1359Single gene

DOOR ID: 2917799		Closa_1359 View Structure
6 1619474-1619556 (+)glycine1619714-1620797 (+)Closa_1526

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Closa_1526Operon

DOOR ID: 735694		Closa_1526,
Closa_1527,
Closa_1528,
Closa_1529,
Closa_1530,
Closa_1531		 View Structure
7 1665226-1665400 (+)lysine1665570-1666455 (+)Closa_1573

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Closa_1573Single gene

DOOR ID: 2917853		Closa_1573 View Structure
8 1872800-1872887 (+)c-di-GMP-I1873163-1873964 (-)Closa_1744

Integrase catalytic region		Closa_1744operon

DOOR ID: 735734		Closa_1744,
Closa_1745		 View Structure
9 2172422-2172610 (+)glmS2172734-2174552 (+)Closa_2018

Glutamine--fructose-6-phosphate aminotransferase [isomerizing]		Closa_2018Single gene

DOOR ID: 2917996		Closa_2018 View Structure
10 2329743-2329840 (-)THF2329109-2329682 (-)Closa_2162

Closa_2162Single gene

DOOR ID: 2918024		Closa_2162 View Structure
11 2345646-2345728 (-)ZMP-ZTP2344841-2345555 (-)Closa_2181

Inosine monophosphate cyclohydrolase-like protein		Closa_2181Operon

DOOR ID: 735836		Closa_2180,
Closa_2181		 View Structure
12 2377591-2377684 (-)Nico2376536-2377475 (-)Closa_2208

Cation diffusion facilitator family transporter		Closa_2208Single gene

DOOR ID: 2918033		Closa_2208 View Structure
13 2463027-2463127 (-)purine2461624-2462962 (-)Closa_2286

Xanthine permease		Closa_2286Single gene

DOOR ID: 2918065		Closa_2286 View Structure
14 2969431-2969517 (+)c-di-GMP-I2969859-2970546 (-)Closa_2750

Uncharacterized protein		Closa_2750single gene

DOOR ID: 2918220		Closa_2750 View Structure
15 3176874-3176949 (+)fluoride3177001-3178216 (+)Closa_2949

Sodium/hydrogen exchanger		Closa_2949Single gene

DOOR ID: 2918283		Closa_2949 View Structure
16 3395941-3396056 (-)THF3394890-3395793 (-)Closa_3147

Closa_3147Operon

DOOR ID: 736032		Closa_3146,
Closa_3147		 View Structure
17 3396123-3396203 (-)ZMP-ZTP3394890-3395793 (-)Closa_3147

Closa_3147Operon

DOOR ID: 736032		Closa_3146,
Closa_3147		 View Structure
18 3402847-3402933 (+)c-di-GMP-I3403415-3403829 (+)Closa_3158

Putative RNA polymerase; sigma 28 subunit; FliA/WhiG subfamily		Closa_3158single gene

DOOR ID: 2918339		Closa_3158 View Structure
19 3428260-3428374 (-)FMN3426993-3428100 (-)Closa_3185

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Closa_3185Operon

DOOR ID: 736040		Closa_3182,
Closa_3183,
Closa_3184,
Closa_3185		 View Structure
20 3511872-3511970 (+)TPP3511996-3512668 (+)Closa_3267

Proton-coupled thiamine transporter YuaJ		Closa_3267Single gene

DOOR ID: 2918380		Closa_3267 View Structure
21 3770990-3771078 (-)c-di-GMP-I3770097-3770592 (-)Closa_3496

RNA polymerase; sigma-24 subunit; ECF subfamily		Closa_3496single gene

DOOR ID: 2918435		Closa_3496 View Structure
22 3784303-3784391 (-)c-di-GMP-I3783397-3783967 (-)Closa_3503

RNA polymerase; sigma-24 subunit; ECF subfamily		Closa_3503single gene

DOOR ID: 2918436		Closa_3503 View Structure
23 3799379-3799466 (-)c-di-GMP-I3798538-3799033 (-)Closa_3516

RNA polymerase; sigma-24 subunit; ECF subfamily		Closa_3516single gene

DOOR ID: 2918438		Closa_3516 View Structure
24 3935551-3935658 (+)TPP3935785-3937093 (+)Closa_3627

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Closa_3627Operon

DOOR ID: 736139		Closa_3627,
Closa_3628,
Closa_3629,
Closa_3630,
Closa_3631		 View Structure
25 4317244-4317372 (-)SAM4315895-4317083 (-)Closa_3979

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Closa_3979Single gene

DOOR ID: 2918544		Closa_3979 View Structure
26 4317581-4317672 (+)glycine4317778-4319164 (+)Closa_3980

Amino acid carrier protein		Closa_3980Single gene

DOOR ID: 2918545		Closa_3980 View Structure
27 4419587-4419682 (+)purine4419693-4421109 (+)Closa_4082

FAD dependent oxidoreductase		Closa_4082Single gene

DOOR ID: 2918573		Closa_4082 View Structure
28 4470004-4470190 (-)cobalamin4469075-4469825 (-)Closa_4125

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Closa_4125Operon

DOOR ID: 736244		Closa_4124,
Closa_4125		 View Structure