RiboswitchDB

Genome: Gamma proteobacterium HdN1 (NC_014366.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

858337-858513 (-)

yybP-ykoY

857754-858333 (-)

HDN1F_07040

Single gene

DOOR ID: 2913408

HDN1F_07040

2

995565-995813 (+)

cobalamin

995993-998105 (+)

btuB

Outer membrane protein; TonB dependent

Operon

DOOR ID: 733264

HDN1F_08090 (btuB),
HDN1F_08100

3

3229599-3229841 (+)

cobalamin

3230054-3230699 (+)

cobO

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)

Operon

DOOR ID: 733639

HDN1F_26260 (cobO),
HDN1F_26270 (cobB)

4

3250805-3251081 (-)

cobalamin

3248563-3250690 (-)

HDN1F_26420

TonB-dependent receptor

Operon

DOOR ID: 733642

HDN1F_26390 (fepC),
HDN1F_26400,
HDN1F_26410,
HDN1F_26420

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014366.1";i:2;s:27:"Gamma proteobacterium HdN1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"995565-995813";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"995993-998105";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:38:"Outer membrane protein; TonB dependent";i:13;s:11:"HDN1F_08090";i:14;s:6:"Operon";i:15;s:6:"733264";i:16;s:29:"HDN1F_08090(btuB);HDN1F_08100";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014366.1";i:2;s:27:"Gamma proteobacterium HdN1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3229599-3229841";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3230054-3230699";i:10;s:1:"+";i:11;s:4:"cobO";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:11:"HDN1F_26260";i:14;s:6:"Operon";i:15;s:6:"733639";i:16;s:35:"HDN1F_26260(cobO);HDN1F_26270(cobB)";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014366.1";i:2;s:27:"Gamma proteobacterium HdN1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3250805-3251081";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3248563-3250690";i:10;s:1:"-";i:11;s:11:"HDN1F_26420";i:12;s:23:"TonB-dependent receptor";i:13;s:11:"HDN1F_26420";i:14;s:6:"Operon";i:15;s:6:"733642";i:16;s:53:"HDN1F_26390(fepC);HDN1F_26400;HDN1F_26410;HDN1F_26420";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure
";}}