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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
226774-226882
(+)
TPP
226972-227887 (+)
Deba_0205
Phosphomethylpyrimidine kinase
Deba_0205
Operon
DOOR ID:
732423
Deba_0205,
Deba_0206,
Deba_0207,
Deba_0208
View Structure
2
426420-426608
(+)
cobalamin
427126-427651 (-)
Deba_0378
Deba_0378
Operon
DOOR ID:
732461
Deba_0378,
Deba_0379
View Structure
3
869231-869423
(-)
cobalamin
867066-869049 (-)
Deba_0771
TonB-dependent receptor plug
Deba_0771
Single gene
DOOR ID:
2912412
Deba_0771
View Structure
4
2198622-2198730
(+)
TPP
2198824-2199607 (+)
Deba_1981
Thiamine thiazole synthase
Deba_1981
Single gene
DOOR ID:
2912760
Deba_1981
View Structure
5
2254577-2254760
(+)
cobalamin
2254871-2256182 (+)
Deba_2032
Thiamine biosynthesis protein ThiC
Deba_2032
Single gene
DOOR ID:
2912781
Deba_2032
View Structure
6
2546372-2546592
(-)
cobalamin
2545449-2546226 (-)
Deba_2297
Deba_2297
Operon
DOOR ID:
732880
Deba_2292,
Deba_2293,
Deba_2294,
Deba_2295,
Deba_2296,
Deba_2297
View Structure
7
2673639-2673840
(-)
cobalamin
2673213-2673528 (-)
Deba_2423
Deba_2423
Single gene
DOOR ID:
2912879
Deba_2423
View Structure
8
2686476-2686608
(+)
cobalamin
2686753-2687680 (+)
Deba_2438
Periplasmic binding protein
Deba_2438
Operon
DOOR ID:
732916
Deba_2438,
Deba_2439
View Structure
9
2708872-2709060
(+)
cobalamin
2709153-2710536 (+)
Deba_2456
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
Deba_2456
Operon
DOOR ID:
732922
Deba_2456,
Deba_2457,
Deba_2458,
Deba_2459,
Deba_2460,
Deba_2461,
Deba_2462,
Deba_2463,
Deba_2464
View Structure
10
2717790-2717976
(+)
cobalamin
2718090-2718939 (+)
Deba_2465
ABC transporter related protein
Deba_2465
Operon
DOOR ID:
732923
Deba_2465,
Deba_2466
View Structure
11
2734557-2734749
(-)
cobalamin
2732400-2734380 (-)
Deba_2476
TonB-dependent receptor
Deba_2476
Single gene
DOOR ID:
2912889
Deba_2476
View Structure
12
2806214-2806412
(-)
cobalamin
2804597-2806097 (-)
Deba_2521
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Deba_2521
Operon
DOOR ID:
732932
Deba_2516,
Deba_2517,
Deba_2518,
Deba_2519,
Deba_2520,
Deba_2521
View Structure
13
2807777-2807982
(+)
cobalamin
2808179-2810303 (+)
Deba_2524
TonB-dependent receptor
Deba_2524
Operon
DOOR ID:
732933
Deba_2524,
Deba_2525,
Deba_2526,
Deba_2527,
Deba_2528
View Structure
14
3196244-3196309
(-)
SAH
3195155-3195920 (+)
Deba_2886
Alpha/beta hydrolase fold protein
Deba_2886
Single gene
DOOR ID:
2913004
Deba_2886
View Structure
15
3203341-3203430
(-)
c-di-GMP-I
3202814-3203270 (-)
Deba_2895
Putative inhibitor of MCP methylation
Deba_2895
single gene
DOOR ID:
2913011
Deba_2895
View Structure
Genome:
Desulfarculus baarsii DSM 2075
(
NC_014365.1
);
Phylum:
delta/epsilon subdivisions
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"226774-226882";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226972-227887";i:10;s:1:"+";i:11;s:9:"Deba_0205";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"Deba_0205";i:14;s:6:"Operon";i:15;s:6:"732423";i:16;s:39:"Deba_0205;Deba_0206;Deba_0207;Deba_0208";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"426420-426608";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"427126-427651";i:10;s:1:"-";i:11;s:9:"Deba_0378";i:12;s:0:"";i:13;s:9:"Deba_0378";i:14;s:6:"Operon";i:15;s:6:"732461";i:16;s:19:"Deba_0378;Deba_0379";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"869231-869423";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"867066-869049";i:10;s:1:"-";i:11;s:9:"Deba_0771";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Deba_0771";i:14;s:11:"Single gene";i:15;s:7:"2912412";i:16;s:9:"Deba_0771";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2198622-2198730";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2198824-2199607";i:10;s:1:"+";i:11;s:9:"Deba_1981";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:9:"Deba_1981";i:14;s:11:"Single gene";i:15;s:7:"2912760";i:16;s:9:"Deba_1981";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2254577-2254760";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2254871-2256182";i:10;s:1:"+";i:11;s:9:"Deba_2032";i:12;s:34:"Thiamine biosynthesis protein ThiC";i:13;s:9:"Deba_2032";i:14;s:11:"Single gene";i:15;s:7:"2912781";i:16;s:9:"Deba_2032";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2546372-2546592";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2545449-2546226";i:10;s:1:"-";i:11;s:9:"Deba_2297";i:12;s:0:"";i:13;s:9:"Deba_2297";i:14;s:6:"Operon";i:15;s:6:"732880";i:16;s:59:"Deba_2292;Deba_2293;Deba_2294;Deba_2295;Deba_2296;Deba_2297";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2673639-2673840";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2673213-2673528";i:10;s:1:"-";i:11;s:9:"Deba_2423";i:12;s:0:"";i:13;s:9:"Deba_2423";i:14;s:11:"Single gene";i:15;s:7:"2912879";i:16;s:9:"Deba_2423";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2686476-2686608";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2686753-2687680";i:10;s:1:"+";i:11;s:9:"Deba_2438";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Deba_2438";i:14;s:6:"Operon";i:15;s:6:"732916";i:16;s:19:"Deba_2438;Deba_2439";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2708872-2709060";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2709153-2710536";i:10;s:1:"+";i:11;s:9:"Deba_2456";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"Deba_2456";i:14;s:6:"Operon";i:15;s:6:"732922";i:16;s:89:"Deba_2456;Deba_2457;Deba_2458;Deba_2459;Deba_2460;Deba_2461;Deba_2462;Deba_2463;Deba_2464";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2717790-2717976";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2718090-2718939";i:10;s:1:"+";i:11;s:9:"Deba_2465";i:12;s:31:"ABC transporter related protein";i:13;s:9:"Deba_2465";i:14;s:6:"Operon";i:15;s:6:"732923";i:16;s:19:"Deba_2465;Deba_2466";i:17;s:23:"nodulation [GO:0009877]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2734557-2734749";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2732400-2734380";i:10;s:1:"-";i:11;s:9:"Deba_2476";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Deba_2476";i:14;s:11:"Single gene";i:15;s:7:"2912889";i:16;s:9:"Deba_2476";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2806214-2806412";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2804597-2806097";i:10;s:1:"-";i:11;s:9:"Deba_2521";i:12;s:64:"Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase";i:13;s:9:"Deba_2521";i:14;s:6:"Operon";i:15;s:6:"732932";i:16;s:59:"Deba_2516;Deba_2517;Deba_2518;Deba_2519;Deba_2520;Deba_2521";i:17;s:48:"nitrogen compound metabolic process [GO:0006807]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2807777-2807982";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2808179-2810303";i:10;s:1:"+";i:11;s:9:"Deba_2524";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Deba_2524";i:14;s:6:"Operon";i:15;s:6:"732933";i:16;s:49:"Deba_2524;Deba_2525;Deba_2526;Deba_2527;Deba_2528";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3196244-3196309";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3195155-3195920";i:10;s:1:"+";i:11;s:9:"Deba_2886";i:12;s:33:"Alpha/beta hydrolase fold protein";i:13;s:9:"Deba_2886";i:14;s:11:"Single gene";i:15;s:7:"2913004";i:16;s:9:"Deba_2886";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014365.1";i:2;s:31:"Desulfarculus baarsii DSM 2075 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3203341-3203430";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3202814-3203270";i:10;s:1:"-";i:11;s:9:"Deba_2895";i:12;s:37:"Putative inhibitor of MCP methylation";i:13;s:9:"Deba_2895";i:14;s:11:"single gene";i:15;s:7:"2913011";i:16;s:9:"Deba_2895";i:17;s:0:"";i:18;s:15:"View Structure ";}}