About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
375756-375842
(-)
ZMP-ZTP
375017-375686 (-)
Olsu_0339
Inosine monophosphate cyclohydrolase
Olsu_0339
Operon
DOOR ID:
731217
Olsu_0338,
Olsu_0339
View Structure
2
380219-380305
(-)
ZMP-ZTP
378738-379938 (+)
Olsu_0343
Major facilitator superfamily MFS_1
Olsu_0343
Operon
DOOR ID:
731218
Olsu_0342,
Olsu_0343
View Structure
3
604544-604621
(+)
c-di-GMP-I
604685-605300 (+)
Olsu_0543
Uncharacterized protein
Olsu_0543
single gene
DOOR ID:
2910716
Olsu_0543
View Structure
4
749581-749692
(+)
TPP
749848-750190 (+)
Olsu_0676
Olsu_0676
Operon
DOOR ID:
731290
Olsu_0676,
Olsu_0677,
Olsu_0678,
Olsu_0679
View Structure
5
789919-789992
(+)
c-di-GMP-I
790278-792684 (+)
Olsu_0707
LPXTG-motif cell wall anchor domain protein
Olsu_0707
single gene
DOOR ID:
2910772
Olsu_0707
View Structure
6
1219831-1219939
(-)
SAM
1218481-1219735 (-)
Olsu_1074
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Olsu_1074
Operon
DOOR ID:
731376
Olsu_1073,
Olsu_1074
View Structure
7
1785486-1785626
(+)
FMN
1785632-1786211 (+)
Olsu_1556
Riboflavin transporter
Olsu_1556
Operon
DOOR ID:
731469
Olsu_1556,
Olsu_1557,
Olsu_1558
View Structure
Genome:
Olsenella uli DSM 7084
(
NC_014363.1
);
Phylum:
Actinobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"375756-375842";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"375017-375686";i:10;s:1:"-";i:11;s:9:"Olsu_0339";i:12;s:36:"Inosine monophosphate cyclohydrolase";i:13;s:9:"Olsu_0339";i:14;s:6:"Operon";i:15;s:6:"731217";i:16;s:19:"Olsu_0338;Olsu_0339";i:17;s:37:"IMP biosynthetic process [GO:0006188]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"380219-380305";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"378738-379938";i:10;s:1:"+";i:11;s:9:"Olsu_0343";i:12;s:35:"Major facilitator superfamily MFS_1";i:13;s:9:"Olsu_0343";i:14;s:6:"Operon";i:15;s:6:"731218";i:16;s:19:"Olsu_0342;Olsu_0343";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"604544-604621";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"604685-605300";i:10;s:1:"+";i:11;s:9:"Olsu_0543";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Olsu_0543";i:14;s:11:"single gene";i:15;s:7:"2910716";i:16;s:9:"Olsu_0543";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"749581-749692";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"749848-750190";i:10;s:1:"+";i:11;s:9:"Olsu_0676";i:12;s:0:"";i:13;s:9:"Olsu_0676";i:14;s:6:"Operon";i:15;s:6:"731290";i:16;s:39:"Olsu_0676;Olsu_0677;Olsu_0678;Olsu_0679";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"789919-789992";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"790278-792684";i:10;s:1:"+";i:11;s:9:"Olsu_0707";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:9:"Olsu_0707";i:14;s:11:"single gene";i:15;s:7:"2910772";i:16;s:9:"Olsu_0707";i:17;s:26:"cell adhesion [GO:0007155]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1219831-1219939";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1218481-1219735";i:10;s:1:"-";i:11;s:9:"Olsu_1074";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"Olsu_1074";i:14;s:6:"Operon";i:15;s:6:"731376";i:16;s:19:"Olsu_1073;Olsu_1074";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014363.1";i:2;s:23:"Olsenella uli DSM 7084 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1785486-1785626";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1785632-1786211";i:10;s:1:"+";i:11;s:9:"Olsu_1556";i:12;s:22:"Riboflavin transporter";i:13;s:9:"Olsu_1556";i:14;s:6:"Operon";i:15;s:6:"731469";i:16;s:29:"Olsu_1556;Olsu_1557;Olsu_1558";i:17;s:0:"";i:18;s:15:"View Structure ";}}