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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1037539-1037642
(-)
TPP
1035530-1037447 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
NIDE1063
Single gene
DOOR ID:
2909537
NIDE1063
(thiC)
View Structure
2
2005173-2005379
(+)
cobalamin
2005544-2006726 (+)
cbiX
Sirohydrochlorin cobaltochelatase
NIDE2091
Operon
DOOR ID:
730661
NIDE2091
(cbiX)
,
NIDE2092,
NIDE2093,
NIDE2094,
NIDE2095
(cbiD)
,
NIDE2096
(cobH)
,
NIDE2097
(cobL)
,
NIDE2098
(cobI)
,
NIDE2099
(cbiG)
,
NIDE2100
(cobJ)
,
NIDE2101,
NIDE2102
(cobM)
,
NIDE2103
(cobA/hemD)
,
NIDE2104
(bluB)
,
NIDE2105
(cobB)
,
NIDE2106
View Structure
3
2019726-2019914
(+)
cobalamin
2019941-2021996 (+)
NIDE2107
TonB-dependent receptor; possible Cobalamin transporter
NIDE2107
Single gene
DOOR ID:
2909831
NIDE2107
View Structure
4
2613700-2613959
(-)
cobalamin
2611688-2613671 (-)
NIDE2671
Putative Vitamin B12 transporter BtuB
NIDE2671
Operon
DOOR ID:
730776
NIDE2666
(cobO)
,
NIDE2667,
NIDE2668,
NIDE2669
(btuR)
,
NIDE2670
(cbiA)
,
NIDE2671
View Structure
5
2617180-2617362
(-)
cobalamin
2616073-2617096 (-)
NIDE2674
Putative Vitamin B12 import system; periplasmic binding protein BtuF
NIDE2674
Operon
DOOR ID:
730777
NIDE2672,
NIDE2673
(btuC)
,
NIDE2674
View Structure
6
4028302-4028377
(+)
fluoride
4028397-4030092 (+)
NIDE4079
Putative ABC-type transport system; ATPase and permease component
NIDE4079
Single gene
DOOR ID:
2910414
NIDE4079
View Structure
Genome:
Candidatus Nitrospira defluvii
(
NC_014355.1
);
Phylum:
Nitrospira
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