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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
98777-98956
(-)
lysine
97331-98678 (-)
LCAZH_0108
LCAZH_0108
Operon
DOOR ID:
729588
LCAZH_0106,
LCAZH_0107,
LCAZH_0108
View Structure
2
339265-339354
(+)
TPP
339510-340077 (+)
LCAZH_0342
LCAZH_0342
Operon
DOOR ID:
729636
LCAZH_0342,
LCAZH_0343,
LCAZH_0344
View Structure
3
801072-801160
(+)
SMK_box
802455-803949 (+)
LCAZH_0821
LCAZH_0821
Single gene
DOOR ID:
2905869
LCAZH_0821
View Structure
4
1255373-1255536
(+)
ykoK
1255753-1256569 (+)
LCAZH_1298
LCAZH_1298
Single gene
DOOR ID:
2906043
LCAZH_1298
View Structure
5
1326350-1326468
(+)
FMN
1326564-1327143 (+)
LCAZH_1360
LCAZH_1360
Single gene
DOOR ID:
2906065
LCAZH_1360
View Structure
6
1708556-1708653
(-)
TPP
1707907-1708513 (-)
LCAZH_1748
LCAZH_1748
Single gene
DOOR ID:
2906170
LCAZH_1748
View Structure
7
1794578-1794753
(-)
lysine
1794436-1794565 (+)
LCAZH_1834
LCAZH_1834
Single gene
DOOR ID:
2906214
LCAZH_1834
View Structure
8
1975588-1975686
(-)
preQ1-II
1974957-1975077 (-)
LCAZH_2015
LCAZH_2015
Operon
DOOR ID:
729976
LCAZH_2015,
LCAZH_2016
View Structure
9
2188668-2188762
(-)
THF
2188112-2188631 (-)
LCAZH_2222
LCAZH_2222
Single gene
DOOR ID:
2906396
LCAZH_2222
View Structure
10
2362768-2362822
(-)
fluoride
2362203-2362614 (-)
LCAZH_2408
LCAZH_2408
Operon
DOOR ID:
730058
LCAZH_2407,
LCAZH_2408
View Structure
11
2363544-2363608
(+)
fluoride
2363667-2364954 (+)
LCAZH_2410
LCAZH_2410
Operon
DOOR ID:
730059
LCAZH_2410,
LCAZH_2411
View Structure
12
2786532-2786704
(+)
lysine
2786807-2788415 (+)
LCAZH_2850
LCAZH_2850
Operon
DOOR ID:
730147
LCAZH_2850,
LCAZH_2851
View Structure
Genome:
Lactobacillus casei str. Zhang
(
NC_014334.1
);
Phylum:
Firmicutes
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