Genome: Clostridium ljungdahlii DSM 13528 (NC_014328.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 160920-161015 (+)ykkC-yxkD161120-161441 (+)CLJU_c01620

Predicted small multidrug resistance protein		CLJU_c01620Single gene

DOOR ID: 2902158		CLJU_c01620 View Structure
2 257220-257319 (+)SAM257489-258665 (+)metK1

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLJU_c02580Single gene

DOOR ID: 2902211		CLJU_c02580 (metK1) View Structure
3 274402-274518 (+)FMN274605-275232 (+)CLJU_c02690

Riboflavin transporter		CLJU_c02690Single gene

DOOR ID: 2902217		CLJU_c02690 View Structure
4 302658-302824 (+)ykoK303062-304325 (+)CLJU_c02970

Putative magnesium binding protein		CLJU_c02970Single gene

DOOR ID: 2902232		CLJU_c02970 View Structure
5 409921-410004 (+)c-di-GMP-II410169-411882 (+)CLJU_c03950

Predicted methyl-accepting chemotaxis protein		CLJU_c03950Operon

DOOR ID: 727743		CLJU_c03950,
CLJU_c03960,
CLJU_c03970,
CLJU_c03980,
CLJU_c03990,
CLJU_c04000		 View Structure
6 475576-475755 (+)cobalamin475912-477109 (+)hemA

Glutamyl-tRNA reductase (GluTR) (0)		CLJU_c04480Operon

DOOR ID: 727756		CLJU_c04480 (hemA),
CLJU_c04490 (hemL)		 View Structure
7 489868-489968 (+)SAM490046-491003 (+)CLJU_c04600

Methionine import ATP-binding protein MetN 		CLJU_c04600Operon

DOOR ID: 727759		CLJU_c04600,
CLJU_c04610,
CLJU_c04620		 View Structure
8 497957-498092 (-)ydaO-yuaA497187-497949 (-)CLJU_c04660

Putative cell wall hydrolase		CLJU_c04660Single gene

DOOR ID: 2902281		CLJU_c04660 View Structure
9 635769-635948 (+)cobalamin636051-637002 (+)CLJU_c05820

Predicted ABC-type Fe3+ transport system periplasmic component		CLJU_c05820Operon

DOOR ID: 727787		CLJU_c05820,
CLJU_c05830,
CLJU_c05840		 View Structure
10 732575-732683 (-)SAM731181-732465 (-)CLJU_c06640

O-acetylhomoserine sulfhydrylase (9)		CLJU_c06640Single gene

DOOR ID: 2902336		CLJU_c06640 View Structure
11 732945-733052 (+)SAM733317-735717 (+)metH1

Methionine synthase (3)		CLJU_c06650Single gene

DOOR ID: 2902337		CLJU_c06650 (metH1) View Structure
12 919832-919918 (+)glycine920056-920254 (+)CLJU_c08320

Transcriptional regulator-like protein		CLJU_c08320Single gene

DOOR ID: 2902397		CLJU_c08320 View Structure
13 935009-935109 (+)purine935187-936624 (+)CLJU_c08480

Putative permease		CLJU_c08480Single gene

DOOR ID: 2902407		CLJU_c08480 View Structure
14 942134-942236 (+)purine942374-942854 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CLJU_c08540Operon

DOOR ID: 727847		CLJU_c08540 (purE),
CLJU_c08550 (purC),
CLJU_c08560,
CLJU_c08570,
CLJU_c08580 (purN),
CLJU_c08590 (purH),
CLJU_c08600 (purD)		 View Structure
15 970323-970425 (+)TPP970487-971222 (+)tatD

Predicted Mg-dependent DNase TatD		CLJU_c08780Operon

DOOR ID: 727853		CLJU_c08780 (tatD),
CLJU_c08790,
CLJU_c08800,
CLJU_c08810		 View Structure
16 990420-990503 (+)c-di-GMP-II990566-991583 (+)rbsB

Predicted ABC-type sugar transport system; periplasmic component		CLJU_c08950Operon

DOOR ID: 727855		CLJU_c08950 (rbsB),
CLJU_c08960		 View Structure
17 1445441-1445541 (-)TPP1444738-1445341 (-)thiE1

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		CLJU_c13440Single gene

DOOR ID: 2902557		CLJU_c13440 (thiE1) View Structure
18 1584399-1584482 (-)c-di-GMP-II1582903-1584217 (-)CLJU_c14670

Predicted vancomycin resistance protein		CLJU_c14670Single gene

DOOR ID: 2902600		CLJU_c14670 View Structure
19 1611655-1611768 (+)FMN1611918-1613448 (+)CLJU_c14910

Predicted carbohydrate kinase		CLJU_c14910Single gene

DOOR ID: 2902611		CLJU_c14910 View Structure
20 1641171-1641272 (-)purine1639679-1640996 (-)CLJU_c15130

Putative xanthine/uracil permease		CLJU_c15130Operon

DOOR ID: 727980		CLJU_c15120,
CLJU_c15130		 View Structure
21 1737919-1738107 (+)ykoK1738336-1739563 (+)CLJU_c15990

Predicted divalent cation transporter		CLJU_c15990Operon

DOOR ID: 728002		CLJU_c15990,
CLJU_c16000,
CLJU_c16010		 View Structure
22 1906018-1906113 (-)ykkC-yxkD1905591-1905912 (-)CLJU_c17550

Predicted small multidrug resistance protein		CLJU_c17550Single gene

DOOR ID: 2902707		CLJU_c17550 View Structure
23 1983395-1983499 (+)SAM1983744-1984560 (+)CLJU_c18310

Predicted ABC nitrate/sulfonate/bicarbonate family transporter; permease component		CLJU_c18310Operon

DOOR ID: 728048		CLJU_c18310,
CLJU_c18320,
CLJU_c18330,
CLJU_c18340		 View Structure
24 2175635-2175753 (+)MOCO2175850-2176666 (+)CLJU_c20070

Predicted ABC-type iron (III) transport system; ATPase component		CLJU_c20070Operon

DOOR ID: 728081		CLJU_c20070,
CLJU_c20080		 View Structure
25 2383699-2383875 (-)lysine2382111-2383575 (-)CLJU_c21810

Predicted amino acid permease		CLJU_c21810Single gene

DOOR ID: 2902917		CLJU_c21810 View Structure
26 2411757-2411872 (-)FMN2410466-2411585 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLJU_c22090Operon

DOOR ID: 728120		CLJU_c22080 (ribE),
CLJU_c22090 (ribD)		 View Structure
27 2423644-2423724 (+)ZMP-ZTP2423777-2424953 (+)CLJU_c22210

Bifunctional AICARFT /IMPCHase (0)		CLJU_c22210Single gene

DOOR ID: 2902933		CLJU_c22210 View Structure
28 2425185-2425361 (-)cobalamin2423777-2424953 (+)CLJU_c22210

Bifunctional AICARFT /IMPCHase (0)		CLJU_c22210Single gene

DOOR ID: 2902933		CLJU_c22210 View Structure
29 2426648-2426823 (-)cobalamin2425822-2426497 (-)cbiM1

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CLJU_c22230Operon

DOOR ID: 728124		CLJU_c22220,
CLJU_c22230 (cbiM1)		 View Structure
30 2444490-2444675 (-)cobalamin2442290-2444255 (-)CLJU_c22350

Predicted cell wall binding protein		CLJU_c22350Operon

DOOR ID: 728126		CLJU_c22340,
CLJU_c22350		 View Structure
31 2449244-2449431 (-)cobalamin2448544-2449012 (-)CLJU_c22370

CLJU_c22370Single gene

DOOR ID: 2902936		CLJU_c22370 View Structure
32 2450188-2450371 (-)cobalamin2449579-2450059 (-)CLJU_c22380

CLJU_c22380Single gene

DOOR ID: 2902937		CLJU_c22380 View Structure
33 2454080-2454265 (-)cobalamin2450557-2453038 (-)CLJU_c22390

Putative surface/cell-adhesion protein; multiple big2 domain		CLJU_c22390Single gene

DOOR ID: 2902938		CLJU_c22390 View Structure
34 2458779-2458965 (-)cobalamin2455361-2458493 (-)CLJU_c22420

Putative surface/cell-adhesion protein		CLJU_c22420Single gene

DOOR ID: 2902941		CLJU_c22420 View Structure
35 2464396-2464582 (-)cobalamin2463256-2464069 (-)CLJU_c22460

CLJU_c22460Single gene

DOOR ID: 2902945		CLJU_c22460 View Structure
36 2465377-2465562 (-)cobalamin2464762-2465020 (-)CLJU_c22470

CLJU_c22470Single gene

DOOR ID: 2902946		CLJU_c22470 View Structure
37 2469341-2469526 (-)cobalamin2467238-2468873 (-)CLJU_c22500

Predicted ABC transporter; ATPase and permease component		CLJU_c22500Single gene

DOOR ID: 2902949		CLJU_c22500 View Structure
38 2566410-2566469 (+)fluoride2566517-2566973 (+)CLJU_c23330

Putative fluoride ion transporter CrcB		CLJU_c23330Operon

DOOR ID: 728142		CLJU_c23330,
CLJU_c23340		 View Structure
39 2571939-2572055 (+)THF2572186-2572978 (+)CLJU_c23410

Conserved membrane protein		CLJU_c23410Single gene

DOOR ID: 2902985		CLJU_c23410 View Structure
40 2585635-2585746 (-)SAM2585395-2585551 (-)CLJU_c23500

CLJU_c23500Single gene

DOOR ID: 2902990		CLJU_c23500 View Structure
41 2592583-2592683 (-)SAM2591411-2592143 (-)metK2

S-adenosylmethionine synthetase 		CLJU_c23550Single gene

DOOR ID: 2902992		CLJU_c23550 (metK2) View Structure
42 2677302-2677395 (-)glycine2676126-2677233 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		CLJU_c24180Operon

DOOR ID: 728157		CLJU_c24150 (gcvPB),
CLJU_c24160 (gcvPA),
CLJU_c24170 (gcvH1),
CLJU_c24180 (gcvT)		 View Structure
43 2687096-2687213 (+)SAM2687387-2688788 (+)CLJU_c24250

Predicted aminoacid permease		CLJU_c24250Operon

DOOR ID: 728159		CLJU_c24250,
CLJU_c24260		 View Structure
44 2695572-2695679 (+)SAM2695906-2696824 (+)metA

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		CLJU_c24330Single gene

DOOR ID: 2903012		CLJU_c24330 (metA) View Structure
45 2698742-2698829 (-)c-di-GMP-I2696920-2698216 (-)CLJU_c24340

Predicted methyl-accepting transducer		CLJU_c24340single gene

DOOR ID: 2903013		CLJU_c24340 View Structure
46 2699041-2699162 (+)SAM2699332-2700133 (+)CLJU_c24350

CLJU_c24350Operon

DOOR ID: 728162		CLJU_c24350,
CLJU_c24360		 View Structure
47 2817898-2818005 (-)TPP2817147-2817807 (-)CLJU_c25410

Aminopyrimidine aminohydrolase 		CLJU_c25410Operon

DOOR ID: 728185		CLJU_c25380,
CLJU_c25390,
CLJU_c25400,
CLJU_c25410		 View Structure
48 3047773-3047873 (-)SAM3046483-3047593 (-)CLJU_c27560

Predicted Uroporphyrinogen-III decarboxylase-like protein		CLJU_c27560Single gene

DOOR ID: 2903157		CLJU_c27560 View Structure
49 3164809-3164984 (-)cobalamin3163782-3164601 (-)cbiQ1

Predicted cobalt transport system; permease subunit		CLJU_c28600Operon

DOOR ID: 728247		CLJU_c28590,
CLJU_c28600 (cbiQ1)		 View Structure
50 3228382-3228471 (+)glycine3228614-3228884 (+)CLJU_c29240

CLJU_c29240Operon

DOOR ID: 728257		CLJU_c29240,
CLJU_c29250		 View Structure
51 3425078-3425173 (+)ykkC-yxkD3425278-3425599 (+)CLJU_c31000

Predicted small multidrug resistance protein		CLJU_c31000Single gene

DOOR ID: 2903315		CLJU_c31000 View Structure
52 3503781-3503954 (-)cobalamin3502087-3503605 (-)cobQ

Cobyric acid synthase		CLJU_c32020Operon

DOOR ID: 728304		CLJU_c31900 (cbiT),
CLJU_c31910 (cbiE),
CLJU_c31920 (cbiD),
CLJU_c31930 (cbiC),
CLJU_c31940 (cobT),
CLJU_c31950 (cbiA),
CLJU_c31960 (hemB),
CLJU_c31970 (hemD),
CLJU_c31980 (hemC),
CLJU_c31990 (sirC),
CLJU_c32000 (cobD1),
CLJU_c32010 (cobD2),
CLJU_c32020 (cobQ)		 View Structure
53 3514946-3515053 (-)SAM3513988-3514810 (-)CLJU_c32100

Lipoprotein		CLJU_c32100Single gene

DOOR ID: 2903335		CLJU_c32100 View Structure
54 3609958-3610059 (+)TPP3610187-3610991 (+)thiD

Phosphomethylpyrimidine kinase 		CLJU_c33040Operon

DOOR ID: 728326		CLJU_c33040 (thiD),
CLJU_c33050 (thiM),
CLJU_c33060 (thiE2),
CLJU_c33070		 View Structure
55 3822112-3822217 (+)TPP3822509-3823079 (+)CLJU_c35050

Putative membrane protein		CLJU_c35050Operon

DOOR ID: 728365		CLJU_c35050,
CLJU_c35060		 View Structure
56 3866479-3866579 (-)SAM3866271-3866430 (-)CLJU_c35440

CLJU_c35440Single gene

DOOR ID: 2903493		CLJU_c35440 View Structure
57 4015279-4015374 (+)ykkC-yxkD4015479-4015800 (+)CLJU_c37030

Predicted small multidrug resistance protein		CLJU_c37030Single gene

DOOR ID: 2903563		CLJU_c37030 View Structure
58 4030879-4030976 (-)purine4029310-4030765 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLJU_c37180Operon

DOOR ID: 728397		CLJU_c37170 (guaA),
CLJU_c37180 (guaB)		 View Structure
59 4160208-4160412 (-)lysine4158905-4160108 (-)lysC

Aspartokinase 		CLJU_c38320Operon

DOOR ID: 728420		CLJU_c38310 (lysA),
CLJU_c38320 (lysC)		 View Structure
60 4183904-4183999 (+)ykkC-yxkD4184104-4184425 (+)CLJU_c38490

Predicted small multidrug resistance protein		CLJU_c38490Single gene

DOOR ID: 2903626		CLJU_c38490 View Structure
61 4396718-4396884 (-)glmS4394724-4396551 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLJU_c40420Single gene

DOOR ID: 2903700		CLJU_c40420 (glmS) View Structure
62 4402886-4403013 (+)ydaO-yuaA4403015-4403540 (+)CLJU_c40480

Putative cell wall hydrolase		CLJU_c40480Single gene

DOOR ID: 2903703		CLJU_c40480 View Structure