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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
165806-165929
(-)
glycine
164548-165676 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RPSI07_0152
Operon
DOOR ID:
722179
RPSI07_0150
(gcvP)
,
RPSI07_0151
(gcvH)
,
RPSI07_0152
(gcvT)
View Structure
2
1072847-1073103
(+)
cobalamin
1073226-1075107 (+)
RPSI07_1069
Putative vitamin B12 transporter; tonB dependent (BtuB)
RPSI07_1069
Operon
DOOR ID:
722359
RPSI07_1069,
RPSI07_1070
(btuC)
,
RPSI07_1071
View Structure
3
1362115-1362321
(-)
yybP-ykoY
1361527-1362100 (-)
RPSI07_1329
RPSI07_1329
Single gene
DOOR ID:
2892184
RPSI07_1329
View Structure
4
2738812-2738942
(+)
ZMP-ZTP
2739071-2740319 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
RPSI07_2609
Single gene
DOOR ID:
2892618
RPSI07_2609
(glyA)
View Structure
5
3399965-3400066
(+)
TPP
3400158-3402054 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RPSI07_3270
Operon
DOOR ID:
722810
RPSI07_3270
(thiC)
,
RPSI07_3271
(thiO)
,
RPSI07_3272
(thiS)
,
RPSI07_3273
(thiG)
,
RPSI07_3274
(thiE)
View Structure
6
3412575-3412652
(+)
SAH
3412775-3414200 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
RPSI07_3283
Operon
DOOR ID:
722814
RPSI07_3283
(ahcY)
,
RPSI07_3284,
RPSI07_3285
(metF)
,
RPSI07_3286
View Structure
Genome:
Ralstonia solanacearum str. PSI07
(
NC_014311.1
);
Phylum:
Betaproteobacteria
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