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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
196833-196955
(-)
glycine
195574-196702 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RCFBP_10183
Operon
DOOR ID:
721192
RCFBP_10181
(gcvP)
,
RCFBP_10182
(gcvH)
,
RCFBP_10183
(gcvT)
View Structure
2
1053779-1054035
(+)
cobalamin
1054158-1056039 (+)
RCFBP_11021
Putative vitamin B12 transporter; tonB dependent (BtuB)
RCFBP_11021
Operon
DOOR ID:
721354
RCFBP_11021,
RCFBP_11022
(btuC)
,
RCFBP_11023,
RCFBP_11024
View Structure
3
1322408-1322613
(-)
yybP-ykoY
1321819-1322392 (-)
RCFBP_11289
RCFBP_11289
Single gene
DOOR ID:
2890289
RCFBP_11289
View Structure
4
2642499-2642628
(+)
ZMP-ZTP
2642755-2644003 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
RCFBP_20684
Single gene
DOOR ID:
2890710
RCFBP_20684
(glyA)
View Structure
5
3294985-3295086
(+)
TPP
3295177-3297073 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RCFBP_21339
Operon
DOOR ID:
721811
RCFBP_21339
(thiC)
,
RCFBP_21340
(thiO)
,
RCFBP_21341
(thiS)
,
RCFBP_21342
(thiG)
,
RCFBP_21343
(thiE)
View Structure
6
3306512-3306588
(+)
SAH
3306711-3308136 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
RCFBP_21350
Operon
DOOR ID:
721814
RCFBP_21350
(ahcY)
,
RCFBP_21351,
RCFBP_21352
(metF)
,
RCFBP_21353
View Structure
Genome:
Ralstonia solanacearum CFBP2957
(
NC_014307.1
);
Phylum:
Betaproteobacteria
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