RiboswitchDB

Genome: Mobiluncus curtisii ATCC 43063 (NC_014246.1); Phylum: Actinobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

203854-203971 (-)

ZMP-ZTP

202538-203834 (-)

glyA

Serine hydroxymethyltransferase (SHMT) (Serine methylase)

HMPREF0573_10173

Operon

DOOR ID: 716376

HMPREF0573_10172 (folD),
HMPREF0573_10173 (glyA)

2

1505814-1505991 (+)

lysine

1506085-1506952 (+)

HMPREF0573_11312

ABC transporter; substrate-binding protein; family 3

HMPREF0573_11312

Operon

DOOR ID: 716624

HMPREF0573_11312,
HMPREF0573_11313,
HMPREF0573_11314

3

1925106-1925228 (-)

FMN

1924202-1925006 (-)

HMPREF0573_11701

ABC transporter; permease protein

HMPREF0573_11701

Operon

DOOR ID: 716714

HMPREF0573_11700,
HMPREF0573_11701

a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014246.1";i:2;s:31:"Mobiluncus curtisii ATCC 43063 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"203854-203971";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"202538-203834";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:16:"HMPREF0573_10173";i:14;s:6:"Operon";i:15;s:6:"716376";i:16;s:45:"HMPREF0573_10172(folD);HMPREF0573_10173(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014246.1";i:2;s:31:"Mobiluncus curtisii ATCC 43063 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1505814-1505991";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1506085-1506952";i:10;s:1:"+";i:11;s:16:"HMPREF0573_11312";i:12;s:52:"ABC transporter; substrate-binding protein; family 3";i:13;s:16:"HMPREF0573_11312";i:14;s:6:"Operon";i:15;s:6:"716624";i:16;s:50:"HMPREF0573_11312;HMPREF0573_11313;HMPREF0573_11314";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014246.1";i:2;s:31:"Mobiluncus curtisii ATCC 43063 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1925106-1925228";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1924202-1925006";i:10;s:1:"-";i:11;s:16:"HMPREF0573_11701";i:12;s:33:"ABC transporter; permease protein";i:13;s:16:"HMPREF0573_11701";i:14;s:6:"Operon";i:15;s:6:"716714";i:16;s:33:"HMPREF0573_11700;HMPREF0573_11701";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure
";}}